Gene loci information

Transcript annotation

  • This transcript has been annotated as Endoplasmin-like protein.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3606 g3606.t2 TTS g3606.t2 26725832 26725832
chr_3 g3606 g3606.t2 isoform g3606.t2 26726004 26728757
chr_3 g3606 g3606.t2 exon g3606.t2.exon1 26726004 26727799
chr_3 g3606 g3606.t2 cds g3606.t2.CDS1 26726004 26727799
chr_3 g3606 g3606.t2 exon g3606.t2.exon2 26727861 26727983
chr_3 g3606 g3606.t2 cds g3606.t2.CDS2 26727861 26727983
chr_3 g3606 g3606.t2 exon g3606.t2.exon3 26728049 26728757
chr_3 g3606 g3606.t2 cds g3606.t2.CDS3 26728049 26728247
chr_3 g3606 g3606.t2 TSS g3606.t2 26728851 26728851

Sequences

>g3606.t2 Gene=g3606 Length=2628
ATGAAGTATTTATTAGCCACGACTCTTGGCATAGTACTATTGATTTCTACAGGTAAATAT
CAAATTTGATAAAATCTCGAATTTTCCATTGTCGGCAATTTAAAAATTTGGCTAATTATC
TTACTGTAATGTAATATATTTTATTACTGAATTCATTTAAAAGGCATCCTTGTTAGTGGA
TCAAAAGATCAAGATGGTGTGGACGATGTTAAAATAGATGCTACACTTAAGACATCAACT
GGTACAGATTCGGAAACATTAAAGCGTGAAGAAGAATCAATTAATATTGATGGCTTGAGT
CAGAAAGAACTTAAAGATTTAAGAGACAAGGTTTGTTCACATAAAAATCTTTTTGATTTA
CATATTTCTTTGTCTTAAAAATATATTTTTATTGGGCCACGTAATTTTTTTTATGTGTTC
ATATAATATTTGAAGATAAAACAAATCTAATAAGAATTTTTCGTCTTTTTAAAGGCTGAA
AAACACACTTTCCAAGCTGAAGTTAATCGAATGATGAAACTTATCATTAATTCACTTTAC
AAAAATAAAGAAATTTTCTTGCGTGAATTAATATCCAATGCGAGTGATGCTCTCGATAAA
ATTCGTTTGATGTCTTTGACAGACCGCGCACAATTGGAAACCAATACGGATTTGATTATT
CGAGTTAAAACTGATAAGGAAAATCGTGTTCTACATATCATTGATACTGGAATCGGAATG
ACTCACGATGACTTAATCAACAATCTTGGTACAATTGCAAAATCTGGAACAGCTGATTTC
TTATCGAAGGTACAAGAAAATGAAAATGGTCAAGATGCTAATGATATGATCGGTCAATTT
GGTGTTGGATTTTATTCTGCTTTCTTGGTCGCCGACAAAGTAGTTGTCACAACAAAACAT
AATGATGATGAACAATATATTTGGGAAAGTGATTCTGCCAATTTCAATATTGTAAAAGAT
CCACGCGGAAGTACACTCAAACGTGGCTCACAAATCTCATTATATTTGAAAGAAGAGGCT
CAAGATTTTTTGGAAGAAGATACTATTAAACAATTAATCAAAAAGTATTCACAGTTCATC
AATTTCCCAATTTATATGTGGACATCAAAAACTGTAGAAGAAGAAGTACCAATTGAAGAA
GAAATTGAAAAGAAGGAAGCTGAAGATGAAACAGATGACGATGAGGCCAAAGTTGAGGAA
GAAGCACCTGAAGAAAAAACTCCAAAAACTAAGAAACAAACTAAAACTGTCTGGGATTGG
GAACTTATGAACGATAGTAAACCAATTTGGACACGTAAACCCGCTGATGTCACACAAGAC
GAATACGATGCATTCTATAAAAGTTTAACTAAAGACACATCGGAACCACTTACACAAACA
CATTTTGTTGCTGAAGGCGAAGTCACATTCAAATCTCTTTTATTTGTACCAAAAATTCAG
CCATCTGAAAGTTTCAACAAATATGGTTCAAAATCAGATAATATTAAATTATATGTTCGA
CGTGTTTTCATCACAGATGAATTTAATGATTTAATGCCCAATTATTTAGGATTCATTCGT
GGTGTTGTAGATTCAGATGATTTGCCATTAAATGTTTCTCGTGAGACTTTACAACAACAT
AAACTGATTAAAGTCATCAAGAAGAAATTAGTAAGAAAAGCTCTTGACATGTTGAAAAAA
TTGGAAGGTGAAGAATATGATAAATTCTGGAAAGAATATTCAACAAATATCAAACTTGGA
GTAATGGAGGACTCGAGCAATCGCGCTCGCTTAGCAAAATTATTGAAATTCCAATCATCA
AATACAAAGAGTGGAAAATTAACATCACTCTCCGACTATTCGAGCCGAATGAAACCAAAG
CAAGAATGGATTTATTATATTGCTGCCGCTTCTCGTGCTGAAGCTGAAAAATCACCTTTC
ATTGAACGTTTAGTTGCTCGCGGTTATGAAGTATTATTCTTAGTCGAAGCTGTTGATGAA
TATTGCATTTCTGCTTTACCTGAATTTGATGGTAAAAAGTTCCAAAATGTTGCCAAAGAA
GGTTTCTCTCTACCAGAATCTGAAGAAGCCAAGGAGAAATTTGAAGAGCTTAAGAACAAA
TTTGAGCCATTGGCTAAGTGGTTTGCAGATGTTGGTTTAAAGGATAAAATTACAAAAGCT
ATGGTTTCAGAGAAATTAACAAATACCCCATGTGTGCTTGTCGCATCAATGTTTGGTTGG
ACTGGAAATATGGAACGTCTTGCAATGTCAAATGCACATAAGAAAGCTGAAGATGTTTCA
CAATCGTACTATTTTAATCAAAAGAAAGCTCTCGAATTCAATCCACGTCATCCTGTCATC
AAAGATCTCCTAAGAAAGATTGATGCCGATCCACAAGACCCGTCTGCTAAGGAAATGGCA
GAACTTTTATTGGACACGGCTGTCCTTCGTTCAGGCTTTATGCTCACAGAAACGAGAAAA
TTTGCAGATAGTATTGATAAACTTATGAGACAAGCAATGAATCTTCAAGATGCAGAATTT
GATCCCGAAATCGAAGAATTCCCAGAACCATCAAATACTGATGAGCCACAGACTGATGCA
GATGAAGAGGAAATAGATGGAGATTTAGAAGAGCATGACGAGCTCTAA

>g3606.t2 Gene=g3606 Length=705
MMKLIINSLYKNKEIFLRELISNASDALDKIRLMSLTDRAQLETNTDLIIRVKTDKENRV
LHIIDTGIGMTHDDLINNLGTIAKSGTADFLSKVQENENGQDANDMIGQFGVGFYSAFLV
ADKVVVTTKHNDDEQYIWESDSANFNIVKDPRGSTLKRGSQISLYLKEEAQDFLEEDTIK
QLIKKYSQFINFPIYMWTSKTVEEEVPIEEEIEKKEAEDETDDDEAKVEEEAPEEKTPKT
KKQTKTVWDWELMNDSKPIWTRKPADVTQDEYDAFYKSLTKDTSEPLTQTHFVAEGEVTF
KSLLFVPKIQPSESFNKYGSKSDNIKLYVRRVFITDEFNDLMPNYLGFIRGVVDSDDLPL
NVSRETLQQHKLIKVIKKKLVRKALDMLKKLEGEEYDKFWKEYSTNIKLGVMEDSSNRAR
LAKLLKFQSSNTKSGKLTSLSDYSSRMKPKQEWIYYIAAASRAEAEKSPFIERLVARGYE
VLFLVEAVDEYCISALPEFDGKKFQNVAKEGFSLPESEEAKEKFEELKNKFEPLAKWFAD
VGLKDKITKAMVSEKLTNTPCVLVASMFGWTGNMERLAMSNAHKKAEDVSQSYYFNQKKA
LEFNPRHPVIKDLLRKIDADPQDPSAKEMAELLLDTAVLRSGFMLTETRKFADSIDKLMR
QAMNLQDAEFDPEIEEFPEPSNTDEPQTDADEEEIDGDLEEHDEL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
21 g3606.t2 CDD cd16927 HATPase_Hsp90-like 1 190 1.94257E-101
17 g3606.t2 Gene3D G3DSA:3.30.565.10 - 1 198 5.2E-103
19 g3606.t2 Gene3D G3DSA:3.30.70.2140 - 199 247 5.2E-103
18 g3606.t2 Gene3D G3DSA:3.30.230.80 - 254 421 1.3E-71
15 g3606.t2 Gene3D G3DSA:3.40.50.11260 - 422 509 4.5E-34
16 g3606.t2 Gene3D G3DSA:1.20.120.790 - 510 663 5.8E-48
5 g3606.t2 Hamap MF_00505 Chaperone protein HtpG [htpG]. 1 660 24.114294
26 g3606.t2 MobiDBLite mobidb-lite consensus disorder prediction 211 243 -
27 g3606.t2 MobiDBLite mobidb-lite consensus disorder prediction 211 230 -
25 g3606.t2 MobiDBLite mobidb-lite consensus disorder prediction 666 705 -
24 g3606.t2 MobiDBLite mobidb-lite consensus disorder prediction 669 705 -
3 g3606.t2 PANTHER PTHR11528:SF96 ENDOPLASMIN 1 698 3.0E-297
4 g3606.t2 PANTHER PTHR11528 HEAT SHOCK PROTEIN 90 FAMILY MEMBER 1 698 3.0E-297
20 g3606.t2 PIRSF PIRSF002583 HSP90_HTPG 1 703 5.1E-237
6 g3606.t2 PRINTS PR00775 90kDa heat shock protein signature 11 33 1.5E-59
10 g3606.t2 PRINTS PR00775 90kDa heat shock protein signature 60 77 1.5E-59
9 g3606.t2 PRINTS PR00775 90kDa heat shock protein signature 78 95 1.5E-59
8 g3606.t2 PRINTS PR00775 90kDa heat shock protein signature 107 129 1.5E-59
11 g3606.t2 PRINTS PR00775 90kDa heat shock protein signature 158 175 1.5E-59
7 g3606.t2 PRINTS PR00775 90kDa heat shock protein signature 176 194 1.5E-59
2 g3606.t2 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 12 169 1.8E-11
1 g3606.t2 Pfam PF00183 Hsp90 protein 172 685 3.9E-216
23 g3606.t2 ProSitePatterns PS00298 Heat shock hsp90 proteins family signature. 10 19 -
22 g3606.t2 SMART SM00387 HKATPase_4 12 170 6.5E-4
13 g3606.t2 SUPERFAMILY SSF55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 2 200 2.01E-62
12 g3606.t2 SUPERFAMILY SSF54211 Ribosomal protein S5 domain 2-like 256 510 5.54E-90
14 g3606.t2 SUPERFAMILY SSF110942 HSP90 C-terminal domain 534 660 1.18E-23

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006457 protein folding BP
GO:0005524 ATP binding MF
GO:0051082 unfolded protein binding MF
GO:0016887 ATP hydrolysis activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values