General information for g3606.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Endoplasmin-like protein.
Parent gene
- The parent gene g3606 is located on chr_3: 26728052..26728757 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3606 | g3606.t4 | isoform | g3606.t4 | 26727065 | 26727792 |
| chr_3 | g3606 | g3606.t4 | exon | g3606.t4.exon1 | 26727065 | 26727792 |
| chr_3 | g3606 | g3606.t4 | cds | g3606.t4.CDS1 | 26727066 | 26727536 |
| chr_3 | g3606 | g3606.t4 | TSS | g3606.t4 | NA | NA |
| chr_3 | g3606 | g3606.t4 | TTS | g3606.t4 | NA | NA |
Sequences
>g3606.t4 Gene=g3606 Length=728
TGGTGTTGGATTTTATTCTGCTTTCTTGGTCGCCGACAAAGTAGTTGTCACAACAAAACA
TAATGATGATGAACAATATATTTGGGAAAGTGATTCTGCCAATTTCAATATTGTAAAAGA
TCCACGCGGAAGTACACTCAAACGTGGCTCACAAATCTCATTATATTTGAAAGAAGAGGC
TCAAGATTTTTTGGAAGAAGATACTATTAAACAATTAATCAAAAAGTATTCACAGTTCAT
CAATTTCCCAATTTATATGTGGACATCAAAAACTGTAGAAGAAGAAGTACCAATTGAAGA
AGAAATTGAAAAGAAGGAAGCTGAAGATGAAACAGATGACGATGAGGCCAAAGTTGAGGA
AGAAGCACCTGAAGAAAAAACTCCAAAAACTAAGAAACAAACTAAAACTGTCTGGGATTG
GGAACTTATGAACGATAGTAAACCAATTTGGACACGTAAACCCGCTGATGTCACACAAGA
CGAATACGATGCATTCTATAAAAGTTTAACTAAAGACACATCGGAACCACTTACACAAAC
ACATTTTGTTGCTGAAGGCGAAGTCACATTCAAATCTCTTTTATTTGTACCAAAAATTCA
GCCATCTGAAAGTTTCAACAAATATGGTTCAAAATCAGATAATATTAAATTATATGTTCG
ACGTGTTTTCATCACAGATGAATTTAATGATTTAATGCCCAATTATTTAGGATTCATTCG
TGGTGTTG
>g3606.t4 Gene=g3606 Length=157
MWTSKTVEEEVPIEEEIEKKEAEDETDDDEAKVEEEAPEEKTPKTKKQTKTVWDWELMND
SKPIWTRKPADVTQDEYDAFYKSLTKDTSEPLTQTHFVAEGEVTFKSLLFVPKIQPSESF
NKYGSKSDNIKLYVRRVFITDEFNDLMPNYLGFIRGV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g3606.t4 | Gene3D | G3DSA:3.30.230.80 | - | 59 | 157 | 1.9E-36 |
| 6 | g3606.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 49 | - |
| 5 | g3606.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 35 | - |
| 2 | g3606.t4 | PANTHER | PTHR11528:SF96 | ENDOPLASMIN | 1 | 157 | 1.4E-54 |
| 3 | g3606.t4 | PANTHER | PTHR11528 | HEAT SHOCK PROTEIN 90 FAMILY MEMBER | 1 | 157 | 1.4E-54 |
| 1 | g3606.t4 | Pfam | PF00183 | Hsp90 protein | 1 | 157 | 3.5E-62 |
| 4 | g3606.t4 | SUPERFAMILY | SSF54211 | Ribosomal protein S5 domain 2-like | 61 | 157 | 9.1E-32 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006457 | protein folding | BP |
| GO:0005524 | ATP binding | MF |
| GO:0051082 | unfolded protein binding | MF |
| GO:0016887 | ATP hydrolysis activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed