Gene loci information

Transcript annotation

  • This transcript has been annotated as Endoplasmin-like protein.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3606 g3606.t6 isoform g3606.t6 26727394 26728757
chr_3 g3606 g3606.t6 exon g3606.t6.exon1 26727394 26727799
chr_3 g3606 g3606.t6 cds g3606.t6.CDS1 26727396 26727799
chr_3 g3606 g3606.t6 exon g3606.t6.exon2 26727861 26727983
chr_3 g3606 g3606.t6 cds g3606.t6.CDS2 26727861 26727983
chr_3 g3606 g3606.t6 exon g3606.t6.exon3 26728049 26728283
chr_3 g3606 g3606.t6 cds g3606.t6.CDS3 26728049 26728247
chr_3 g3606 g3606.t6 exon g3606.t6.exon4 26728428 26728596
chr_3 g3606 g3606.t6 exon g3606.t6.exon5 26728706 26728757
chr_3 g3606 g3606.t6 TSS g3606.t6 26728851 26728851
chr_3 g3606 g3606.t6 TTS g3606.t6 NA NA

Sequences

>g3606.t6 Gene=g3606 Length=985
ATGAAGTATTTATTAGCCACGACTCTTGGCATAGTACTATTGATTTCTACAGAGGCATCC
TTGTTAGTGGATCAAAAGATCAAGATGGTGTGGACGATGTTAAAATAGATGCTACACTTA
AGACATCAACTGGTACAGATTCGGAAACATTAAAGCGTGAAGAAGAATCAATTAATATTG
ATGGCTTGAGTCAGAAAGAACTTAAAGATTTAAGAGACAAGGCTGAAAAACACACTTTCC
AAGCTGAAGTTAATCGAATGATGAAACTTATCATTAATTCACTTTACAAAAATAAAGAAA
TTTTCTTGCGTGAATTAATATCCAATGCGAGTGATGCTCTCGATAAAATTCGTTTGATGT
CTTTGACAGACCGCGCACAATTGGAAACCAATACGGATTTGATTATTCGAGTTAAAACTG
ATAAGGAAAATCGTGTTCTACATATCATTGATACTGGAATCGGAATGACTCACGATGACT
TAATCAACAATCTTGGTACAATTGCAAAATCTGGAACAGCTGATTTCTTATCGAAGGTAC
AAGAAAATGAAAATGGTCAAGATGCTAATGATATGATCGGTCAATTTGGTGTTGGATTTT
ATTCTGCTTTCTTGGTCGCCGACAAAGTAGTTGTCACAACAAAACATAATGATGATGAAC
AATATATTTGGGAAAGTGATTCTGCCAATTTCAATATTGTAAAAGATCCACGCGGAAGTA
CACTCAAACGTGGCTCACAAATCTCATTATATTTGAAAGAAGAGGCTCAAGATTTTTTGG
AAGAAGATACTATTAAACAATTAATCAAAAAGTATTCACAGTTCATCAATTTCCCAATTT
ATATGTGGACATCAAAAACTGTAGAAGAAGAAGTACCAATTGAAGAAGAAATTGAAAAGA
AGGAAGCTGAAGATGAAACAGATGACGATGAGGCCAAAGTTGAGGAAGAAGCACCTGAAG
AAAAAACTCCAAAAACTAAGAAACA

>g3606.t6 Gene=g3606 Length=242
MMKLIINSLYKNKEIFLRELISNASDALDKIRLMSLTDRAQLETNTDLIIRVKTDKENRV
LHIIDTGIGMTHDDLINNLGTIAKSGTADFLSKVQENENGQDANDMIGQFGVGFYSAFLV
ADKVVVTTKHNDDEQYIWESDSANFNIVKDPRGSTLKRGSQISLYLKEEAQDFLEEDTIK
QLIKKYSQFINFPIYMWTSKTVEEEVPIEEEIEKKEAEDETDDDEAKVEEEAPEEKTPKT
KK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
14 g3606.t6 CDD cd16927 HATPase_Hsp90-like 1 190 8.04233E-105
12 g3606.t6 Gene3D G3DSA:3.30.565.10 - 1 198 2.7E-103
13 g3606.t6 Gene3D G3DSA:3.30.70.2140 - 199 241 2.7E-103
17 g3606.t6 MobiDBLite mobidb-lite consensus disorder prediction 208 242 -
18 g3606.t6 MobiDBLite mobidb-lite consensus disorder prediction 209 230 -
3 g3606.t6 PANTHER PTHR11528:SF96 ENDOPLASMIN 1 242 1.6E-104
4 g3606.t6 PANTHER PTHR11528 HEAT SHOCK PROTEIN 90 FAMILY MEMBER 1 242 1.6E-104
5 g3606.t6 PRINTS PR00775 90kDa heat shock protein signature 11 33 1.5E-61
9 g3606.t6 PRINTS PR00775 90kDa heat shock protein signature 60 77 1.5E-61
8 g3606.t6 PRINTS PR00775 90kDa heat shock protein signature 78 95 1.5E-61
7 g3606.t6 PRINTS PR00775 90kDa heat shock protein signature 107 129 1.5E-61
10 g3606.t6 PRINTS PR00775 90kDa heat shock protein signature 158 175 1.5E-61
6 g3606.t6 PRINTS PR00775 90kDa heat shock protein signature 176 194 1.5E-61
2 g3606.t6 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 12 169 1.6E-12
1 g3606.t6 Pfam PF00183 Hsp90 protein 172 242 2.4E-16
15 g3606.t6 ProSitePatterns PS00298 Heat shock hsp90 proteins family signature. 10 19 -
16 g3606.t6 SMART SM00387 HKATPase_4 12 170 6.5E-4
11 g3606.t6 SUPERFAMILY SSF55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 2 200 1.27E-63

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006457 protein folding BP
GO:0005524 ATP binding MF
GO:0051082 unfolded protein binding MF
GO:0016887 ATP hydrolysis activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed