General information for g3611.t11
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Heat shock factor.
Parent gene
- The parent gene g3611 is located on chr_3: 26742728..26747182 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3611 | g3611.t11 | isoform | g3611.t11 | 26742728 | 26745453 |
| chr_3 | g3611 | g3611.t11 | exon | g3611.t11.exon1 | 26742728 | 26743511 |
| chr_3 | g3611 | g3611.t11 | TTS | g3611.t11 | 26742736 | 26742736 |
| chr_3 | g3611 | g3611.t11 | cds | g3611.t11.CDS1 | 26743503 | 26743511 |
| chr_3 | g3611 | g3611.t11 | exon | g3611.t11.exon2 | 26743578 | 26743660 |
| chr_3 | g3611 | g3611.t11 | cds | g3611.t11.CDS2 | 26743578 | 26743660 |
| chr_3 | g3611 | g3611.t11 | exon | g3611.t11.exon3 | 26743725 | 26743800 |
| chr_3 | g3611 | g3611.t11 | cds | g3611.t11.CDS3 | 26743725 | 26743800 |
| chr_3 | g3611 | g3611.t11 | exon | g3611.t11.exon4 | 26744248 | 26744304 |
| chr_3 | g3611 | g3611.t11 | cds | g3611.t11.CDS4 | 26744248 | 26744304 |
| chr_3 | g3611 | g3611.t11 | exon | g3611.t11.exon5 | 26744553 | 26744798 |
| chr_3 | g3611 | g3611.t11 | cds | g3611.t11.CDS5 | 26744553 | 26744798 |
| chr_3 | g3611 | g3611.t11 | exon | g3611.t11.exon6 | 26744860 | 26745453 |
| chr_3 | g3611 | g3611.t11 | cds | g3611.t11.CDS6 | 26744860 | 26745420 |
| chr_3 | g3611 | g3611.t11 | TSS | g3611.t11 | NA | NA |
Sequences
>g3611.t11 Gene=g3611 Length=1840
GGAAGCGGTATTGGCAAACGTCGTTATCAGTTAATGATCAATGATGCACCACAAGCAAAA
GTTAAAAAAACAAATAATGGTCCAATTATAAGCGAACTTACTGAAGAATTGCTAGATGAT
GTTGAATCTGATCTAGATAACGATTCATGTAATTTTACAAACGTACAATCACCTGAATCA
GACACATGCAAAAATGAAGATAAAGAAACAACTTCTTTTGACAAATGTTTGGAAAGATGT
TTAGAAATTGACGATAATGTTGATGAAATTGATACAAACAATATGAAAGAATATTGCAAA
ACAATATTTAAAAAGAAACAAAATATTAATGACAAAGCAACAAGCTCAAAAATGGACAAG
CAACAAATAAAGAAAGAAGCTACTGAGAATGCTTCTATTGTTCAAAAATCTACGGGAAAA
AGTTTGCTCATACCATCAAAAGATAATAAAACTACAACAGATATTACATATAATATTATT
AACGCTGATAATGAGATGACCATAACAAATAATTCAGCTGGTATAACTAATACAAAACCA
AAAGAAGATGGATTAACTGAAACACAATATCAAAATTTCGATGATACCTCACAAAACACA
GATCTTCTAGATGATGAGGATTTATTTAAGTTTGTTGATAAAAAAGAGCAGCAACAGACT
TCTGGAGATGATTCGCTTCTAATAACAAAATATAATCGATCAAATTCAACAGACATCATG
GGGTTAAATTCACTAGAAGATTACTCTAATCATATAGACACCGTTCAATCTGATTTAGAT
TCGTTGAAAGATTTATTGCATAACGATGCTTATCAGTTGGATACAAATCAATTATTAGGG
AATGGTGCTGTTTACACTATGCCTTTTGGGAACTATGATGCTGATACTATTTCAAAGCTC
TTTGGTAATGACGATTTGATTGGTTATGAAATGTCGCCAGCTAACATGGAACTTTTTGCT
GAAGATAAAAAAGACGACCAAACATCACCAGGATCTGAAGTTGTCGCATATCAACCATAC
AACAATAATTTAGATTTGAATGAGCTGCTAAATAATCTTATATAATTCTAGGATTACATG
AAGTGCTTCTTATATTTATGCGATTTCTGCTTGCGATGATCACAAAGAGACGATTTAAAA
GCTATAAAGCACTAAATTGAAAGACTTGTGTATTTAAATGAAAACGGAAAAAATGGGGTG
AACCGATTAATTGTTATAATTTAGCACCTACCTTGTAGGAAACATATATGTCATAATTTA
AATAATTTAAGAACTCCTTTTAAAATATATTCTGCTTTCACATAATTTTAATTATAATTC
ACATTTACTTCAAAAGAAATATAAAAACAAGTTTAAGCAGATCTCTGTCTGTTAAAAACT
ACTCCTCAAGAATATCAAAATGCGGGATTTCAAGTATATACATAGCAAGTACAAAACTAA
AAATTCATTCAGTTTTCCCTCAATTTCTTTGTAATAAAAGAAAATCCACTTTAATGTCCA
ATTTTCCATAAAAGATTATAAGAGTAGTTCGGCGCGAGATGCATTCGATATGAAAATAGA
ATTGTATAAATATATTTATAAAATATTGGTGCCGGATCAAACAAGAATGAAAATTCTAGC
CCTTATATTCTAATATAGTAGATTACTTTTGATTTTATACTTTTTATTAAAACTAACTTA
GCATACTCGAGCATGGTTTTAAAACCTTAATTGACTCTCAAGAGACTATCAAAAAGTCAA
AATGTTGTGTTTTAAAGTTCGTTGAGTGTCAATTGATTGGTTTTGTCAATTTTTTTTTGA
GAAATGAATAAAATATTTTTTTTGAAAAACTCAATAAAAG
>g3611.t11 Gene=g3611 Length=343
MINDAPQAKVKKTNNGPIISELTEELLDDVESDLDNDSCNFTNVQSPESDTCKNEDKETT
SFDKCLERCLEIDDNVDEIDTNNMKEYCKTIFKKKQNINDKATSSKMDKQQIKKEATENA
SIVQKSTGKSLLIPSKDNKTTTDITYNIINADNEMTITNNSAGITNTKPKEDGLTETQYQ
NFDDTSQNTDLLDDEDLFKFVDKKEQQQTSGDDSLLITKYNRSNSTDIMGLNSLEDYSNH
IDTVQSDLDSLKDLLHNDAYQLDTNQLLGNGAVYTMPFGNYDADTISKLFGNDDLIGYEM
SPANMELFAEDKKDDQTSPGSEVVAYQPYNNNLDLNELLNNLI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g3611.t11 | Coils | Coil | Coil | 234 | 254 | - |
| 1 | g3611.t11 | MobiDBLite | mobidb-lite | consensus disorder prediction | 102 | 121 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
