General information for g3611.t15
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Heat shock factor.
Parent gene
- The parent gene g3611 is located on chr_3: 26742728..26747182 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3611 | g3611.t15 | TTS | g3611.t15 | 26742736 | 26742736 |
| chr_3 | g3611 | g3611.t15 | isoform | g3611.t15 | 26743487 | 26745453 |
| chr_3 | g3611 | g3611.t15 | exon | g3611.t15.exon1 | 26743487 | 26743496 |
| chr_3 | g3611 | g3611.t15 | exon | g3611.t15.exon2 | 26743556 | 26743660 |
| chr_3 | g3611 | g3611.t15 | exon | g3611.t15.exon3 | 26743725 | 26743800 |
| chr_3 | g3611 | g3611.t15 | cds | g3611.t15.CDS1 | 26743790 | 26743800 |
| chr_3 | g3611 | g3611.t15 | exon | g3611.t15.exon4 | 26744244 | 26744304 |
| chr_3 | g3611 | g3611.t15 | cds | g3611.t15.CDS2 | 26744244 | 26744304 |
| chr_3 | g3611 | g3611.t15 | exon | g3611.t15.exon5 | 26744553 | 26744798 |
| chr_3 | g3611 | g3611.t15 | cds | g3611.t15.CDS3 | 26744553 | 26744798 |
| chr_3 | g3611 | g3611.t15 | exon | g3611.t15.exon6 | 26744860 | 26745453 |
| chr_3 | g3611 | g3611.t15 | cds | g3611.t15.CDS4 | 26744860 | 26745420 |
| chr_3 | g3611 | g3611.t15 | TSS | g3611.t15 | NA | NA |
Sequences
>g3611.t15 Gene=g3611 Length=1092
GGAAGCGGTATTGGCAAACGTCGTTATCAGTTAATGATCAATGATGCACCACAAGCAAAA
GTTAAAAAAACAAATAATGGTCCAATTATAAGCGAACTTACTGAAGAATTGCTAGATGAT
GTTGAATCTGATCTAGATAACGATTCATGTAATTTTACAAACGTACAATCACCTGAATCA
GACACATGCAAAAATGAAGATAAAGAAACAACTTCTTTTGACAAATGTTTGGAAAGATGT
TTAGAAATTGACGATAATGTTGATGAAATTGATACAAACAATATGAAAGAATATTGCAAA
ACAATATTTAAAAAGAAACAAAATATTAATGACAAAGCAACAAGCTCAAAAATGGACAAG
CAACAAATAAAGAAAGAAGCTACTGAGAATGCTTCTATTGTTCAAAAATCTACGGGAAAA
AGTTTGCTCATACCATCAAAAGATAATAAAACTACAACAGATATTACATATAATATTATT
AACGCTGATAATGAGATGACCATAACAAATAATTCAGCTGGTATAACTAATACAAAACCA
AAAGAAGATGGATTAACTGAAACACAATATCAAAATTTCGATGATACCTCACAAAACACA
GATCTTCTAGATGATGAGGATTTATTTAAGTTTGTTGATAAAAAAGAGCAGCAACAGACT
TCTGGAGATGATTCGCTTCTAATAACAAAATATAATCGATCAAATTCAACAGACATCATG
GGGTTAAATTCACTAGAAGATTACTCTAATCATATAGACACCGTTCAATCTGATTTAGAT
TCGTTGAAAGATTTATTGCATAACGATGCTTATCAGTTGGATACAAATCAATTATTAGGG
AATGGTGCTGTTTACACTATGCCTTTTGGGAACTATGATGCTGATACTATTTCAAAGGTT
TCTCTTTGGTAATGACGATTTGATTGGTTATGAAATGTCGCCAGCTAACATGGAACTTTT
TGCTGAAGATAAAAAAGACGACCAAACATCACCAGGATCTGAAGTTGTCGCATATCAACC
ATACAACAATAATTTAGATTTGAATGAGCTGCTAAATAATGTTAGCAACAATGCATAAAA
AGGATTACATGA
>g3611.t15 Gene=g3611 Length=292
MINDAPQAKVKKTNNGPIISELTEELLDDVESDLDNDSCNFTNVQSPESDTCKNEDKETT
SFDKCLERCLEIDDNVDEIDTNNMKEYCKTIFKKKQNINDKATSSKMDKQQIKKEATENA
SIVQKSTGKSLLIPSKDNKTTTDITYNIINADNEMTITNNSAGITNTKPKEDGLTETQYQ
NFDDTSQNTDLLDDEDLFKFVDKKEQQQTSGDDSLLITKYNRSNSTDIMGLNSLEDYSNH
IDTVQSDLDSLKDLLHNDAYQLDTNQLLGNGAVYTMPFGNYDADTISKVSLW
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g3611.t15 | Coils | Coil | Coil | 234 | 254 | - |
| 1 | g3611.t15 | MobiDBLite | mobidb-lite | consensus disorder prediction | 102 | 121 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
