Gene loci information

Transcript annotation

  • This transcript has been annotated as Heat shock factor.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3611 g3611.t20 isoform g3611.t20 26744922 26745908
chr_3 g3611 g3611.t20 exon g3611.t20.exon1 26744922 26745908
chr_3 g3611 g3611.t20 cds g3611.t20.CDS1 26744923 26745870
chr_3 g3611 g3611.t20 TSS g3611.t20 NA NA
chr_3 g3611 g3611.t20 TTS g3611.t20 NA NA

Sequences

>g3611.t20 Gene=g3611 Length=987
CAAAAGAATTACTTCCTCTTAATTACAAGCACAACAATATGGCTAGTTTTATTCGACAGC
TTAATATGTATGGCTTTCATAAAATAACTTCAATCGACAATGGCGGTTTGAAATTTGATA
AAGATGAAATGGAATTTTCTCATCCTTATTTTCAAAAAGGTCATCCATATTTACTTGAGC
ATATTAAACGAAAGATTGCACATCCAAAACAACCGGAAGCTGATAAAACAACTGTAACAA
AAGTGGAGACTATGAATCGAGTTTTACATGAAGTCAAAAATATGAGGGGTCGTCAAGACT
CCTTGGATACTCGTTTCAGTGCTATGAAACAGGAGAATGAAGCATTATGGCGTGAAGTCG
CAATTTTACGACAAAAACATATGAAGCAACAACAAATTGTAAACAAATTAATACAATTTT
TGGTAACAATTGTTCAACCAAATCGAGGTGGTCTTGGAAGCGGTATTGGCAAACGTCGTT
ATCAGTTAATGATCAATGATGCACCACAAGCAAAAGTTAAAAAAACAAATAATGGTCCAA
TTATAAGCGAACTTACTGAAGAATTGCTAGATGATGTTGAATCTGATCTAGATAACGATT
CATGTAATTTTACAAACGTACAATCACCTGAATCAGACACATGCAAAAATGAAGATAAAG
AAACAACTTCTTTTGACAAATGTTTGGAAAGATGTTTAGAAATTGACGATAATGTTGATG
AAATTGATACAAACAATATGAAAGAATATTGCAAAACAATATTTAAAAAGAAACAAAATA
TTAATGACAAAGCAACAAGCTCAAAAATGGACAAGCAACAAATAAAGAAAGAAGCTACTG
AGAATGCTTCTATTGTTCAAAAATCTACGGGAAAAAGTTTGCTCATACCATCAAAAGATA
ATAAAACTACAACAGATATTACATATAATATTATTAACGCTGATAATGAGATGACCATAA
CAAATAATTCAGCTGGTATAACTAATA

>g3611.t20 Gene=g3611 Length=316
MASFIRQLNMYGFHKITSIDNGGLKFDKDEMEFSHPYFQKGHPYLLEHIKRKIAHPKQPE
ADKTTVTKVETMNRVLHEVKNMRGRQDSLDTRFSAMKQENEALWREVAILRQKHMKQQQI
VNKLIQFLVTIVQPNRGGLGSGIGKRRYQLMINDAPQAKVKKTNNGPIISELTEELLDDV
ESDLDNDSCNFTNVQSPESDTCKNEDKETTSFDKCLERCLEIDDNVDEIDTNNMKEYCKT
IFKKKQNINDKATSSKMDKQQIKKEATENASIVQKSTGKSLLIPSKDNKTTTDITYNIIN
ADNEMTITNNSAGITN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
6 g3611.t20 Gene3D G3DSA:1.10.10.10 winged helix repressor DNA binding domain 1 52 0.0e+00
2 g3611.t20 PANTHER PTHR10015 HEAT SHOCK TRANSCRIPTION FACTOR 1 158 0.0e+00
3 g3611.t20 PANTHER PTHR10015:SF274 HEAT SHOCK FACTOR PROTEIN 1 1 158 0.0e+00
1 g3611.t20 Pfam PF00447 HSF-type DNA-binding 1 52 0.0e+00
5 g3611.t20 SMART SM00415 hsfneu3 1 52 1.1e-05
4 g3611.t20 SUPERFAMILY SSF46785 Winged helix DNA-binding domain 1 52 0.0e+00

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006355 regulation of transcription, DNA-templated BP
GO:0043565 sequence-specific DNA binding MF
GO:0003700 DNA-binding transcription factor activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed