General information for g3611.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Heat shock factor.
Parent gene
- The parent gene g3611 is located on chr_3: 26742728..26747182 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3611 | g3611.t6 | isoform | g3611.t6 | 26742728 | 26744793 |
| chr_3 | g3611 | g3611.t6 | exon | g3611.t6.exon1 | 26742728 | 26743496 |
| chr_3 | g3611 | g3611.t6 | TTS | g3611.t6 | 26742736 | 26742736 |
| chr_3 | g3611 | g3611.t6 | exon | g3611.t6.exon2 | 26743556 | 26743660 |
| chr_3 | g3611 | g3611.t6 | cds | g3611.t6.CDS1 | 26743560 | 26743660 |
| chr_3 | g3611 | g3611.t6 | exon | g3611.t6.exon3 | 26743725 | 26743800 |
| chr_3 | g3611 | g3611.t6 | cds | g3611.t6.CDS2 | 26743725 | 26743800 |
| chr_3 | g3611 | g3611.t6 | exon | g3611.t6.exon4 | 26744248 | 26744304 |
| chr_3 | g3611 | g3611.t6 | cds | g3611.t6.CDS3 | 26744248 | 26744304 |
| chr_3 | g3611 | g3611.t6 | exon | g3611.t6.exon5 | 26744553 | 26744793 |
| chr_3 | g3611 | g3611.t6 | cds | g3611.t6.CDS4 | 26744553 | 26744675 |
| chr_3 | g3611 | g3611.t6 | TSS | g3611.t6 | NA | NA |
Sequences
>g3611.t6 Gene=g3611 Length=1248
AGATCTTCTAGATGATGAGGATTTATTTAAGTTTGTTGATAAAAAAGAGCAGCAACAGAC
TTCTGGAGATGATTCGCTTCTAATAACAAAATATAATCGATCAAATTCAACAGACATCAT
GGGGTTAAATTCACTAGAAGATTACTCTAATCATATAGACACCGTTCAATCTGATTTAGA
TTCGTTGAAAGATTTATTGCATAACGATGCTTATCAGTTGGATACAAATCAATTATTAGG
GAATGGTGCTGTTTACACTATGCCTTTTGGGAACTATGATGCTGATACTATTTCAAAGCT
CTTTGGTAATGACGATTTGATTGGTTATGAAATGTCGCCAGCTAACATGGAACTTTTTGC
TGAAGATAAAAAAGACGACCAAACATCACCAGGATCTGAAGTTGTCGCATATCAACCATA
CAACAATAATTTAGATTTGAATGAGCTGCTAAATAATGTTAGCAACAATGCATAAAAAGG
ATTACATGAAGTGCTTCTTATATTTATGCGATTTCTGCTTGCGATGATCACAAAGAGACG
ATTTAAAAGCTATAAAGCACTAAATTGAAAGACTTGTGTATTTAAATGAAAACGGAAAAA
ATGGGGTGAACCGATTAATTGTTATAATTTAGCACCTACCTTGTAGGAAACATATATGTC
ATAATTTAAATAATTTAAGAACTCCTTTTAAAATATATTCTGCTTTCACATAATTTTAAT
TATAATTCACATTTACTTCAAAAGAAATATAAAAACAAGTTTAAGCAGATCTCTGTCTGT
TAAAAACTACTCCTCAAGAATATCAAAATGCGGGATTTCAAGTATATACATAGCAAGTAC
AAAACTAAAAATTCATTCAGTTTTCCCTCAATTTCTTTGTAATAAAAGAAAATCCACTTT
AATGTCCAATTTTCCATAAAAGATTATAAGAGTAGTTCGGCGCGAGATGCATTCGATATG
AAAATAGAATTGTATAAATATATTTATAAAATATTGGTGCCGGATCAAACAAGAATGAAA
ATTCTAGCCCTTATATTCTAATATAGTAGATTACTTTTGATTTTATACTTTTTATTAAAA
CTAACTTAGCATACTCGAGCATGGTTTTAAAACCTTAATTGACTCTCAAGAGACTATCAA
AAAGTCAAAATGTTGTGTTTTAAAGTTCGTTGAGTGTCAATTGATTGGTTTTGTCAATTT
TTTTTTGAGAAATGAATAAAATATTTTTTTTGAAAAACTCAATAAAAG
>g3611.t6 Gene=g3611 Length=118
MGLNSLEDYSNHIDTVQSDLDSLKDLLHNDAYQLDTNQLLGNGAVYTMPFGNYDADTISK
LFGNDDLIGYEMSPANMELFAEDKKDDQTSPGSEVVAYQPYNNNLDLNELLNNVSNNA
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g3611.t6 | Coils | Coil | Coil | 6 | 26 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
