General information for g3611.t9
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Heat shock factor.
Parent gene
- The parent gene g3611 is located on chr_3: 26742728..26747182 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3611 | g3611.t9 | isoform | g3611.t9 | 26742728 | 26744922 |
| chr_3 | g3611 | g3611.t9 | exon | g3611.t9.exon1 | 26742728 | 26743496 |
| chr_3 | g3611 | g3611.t9 | TTS | g3611.t9 | 26742736 | 26742736 |
| chr_3 | g3611 | g3611.t9 | exon | g3611.t9.exon2 | 26743556 | 26743660 |
| chr_3 | g3611 | g3611.t9 | cds | g3611.t9.CDS1 | 26743560 | 26743660 |
| chr_3 | g3611 | g3611.t9 | exon | g3611.t9.exon3 | 26743725 | 26743800 |
| chr_3 | g3611 | g3611.t9 | cds | g3611.t9.CDS2 | 26743725 | 26743800 |
| chr_3 | g3611 | g3611.t9 | exon | g3611.t9.exon4 | 26744553 | 26744798 |
| chr_3 | g3611 | g3611.t9 | cds | g3611.t9.CDS3 | 26744553 | 26744675 |
| chr_3 | g3611 | g3611.t9 | exon | g3611.t9.exon5 | 26744860 | 26744922 |
| chr_3 | g3611 | g3611.t9 | TSS | g3611.t9 | NA | NA |
Sequences
>g3611.t9 Gene=g3611 Length=1259
ACAAAACCAAAAGAAGATGGATTAACTGAAACACAATATCAAAATTTCGATGATACCTCA
CAAAACACAGATCTTCTAGATGATGAGGATTTATTTAAGTTTGTTGATAAAAAAGAGCAG
CAACAGACTTCTGGAGATGATTCGCTTCTAATAACAAAATATAATCGATCAAATTCAACA
GACATCATGGGGTTAAATTCACTAGAAGATTACTCTAATCATATAGACACCGTTCAATCT
GATTTAGATTCGTTGAAAGATTTATTGCATAACGATGCTTATCAGTTGGATACAAATCAA
TTATTAGGGCTCTTTGGTAATGACGATTTGATTGGTTATGAAATGTCGCCAGCTAACATG
GAACTTTTTGCTGAAGATAAAAAAGACGACCAAACATCACCAGGATCTGAAGTTGTCGCA
TATCAACCATACAACAATAATTTAGATTTGAATGAGCTGCTAAATAATGTTAGCAACAAT
GCATAAAAAGGATTACATGAAGTGCTTCTTATATTTATGCGATTTCTGCTTGCGATGATC
ACAAAGAGACGATTTAAAAGCTATAAAGCACTAAATTGAAAGACTTGTGTATTTAAATGA
AAACGGAAAAAATGGGGTGAACCGATTAATTGTTATAATTTAGCACCTACCTTGTAGGAA
ACATATATGTCATAATTTAAATAATTTAAGAACTCCTTTTAAAATATATTCTGCTTTCAC
ATAATTTTAATTATAATTCACATTTACTTCAAAAGAAATATAAAAACAAGTTTAAGCAGA
TCTCTGTCTGTTAAAAACTACTCCTCAAGAATATCAAAATGCGGGATTTCAAGTATATAC
ATAGCAAGTACAAAACTAAAAATTCATTCAGTTTTCCCTCAATTTCTTTGTAATAAAAGA
AAATCCACTTTAATGTCCAATTTTCCATAAAAGATTATAAGAGTAGTTCGGCGCGAGATG
CATTCGATATGAAAATAGAATTGTATAAATATATTTATAAAATATTGGTGCCGGATCAAA
CAAGAATGAAAATTCTAGCCCTTATATTCTAATATAGTAGATTACTTTTGATTTTATACT
TTTTATTAAAACTAACTTAGCATACTCGAGCATGGTTTTAAAACCTTAATTGACTCTCAA
GAGACTATCAAAAAGTCAAAATGTTGTGTTTTAAAGTTCGTTGAGTGTCAATTGATTGGT
TTTGTCAATTTTTTTTTGAGAAATGAATAAAATATTTTTTTTGAAAAACTCAATAAAAG
>g3611.t9 Gene=g3611 Length=99
MGLNSLEDYSNHIDTVQSDLDSLKDLLHNDAYQLDTNQLLGLFGNDDLIGYEMSPANMEL
FAEDKKDDQTSPGSEVVAYQPYNNNLDLNELLNNVSNNA
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g3611.t9 | Coils | Coil | Coil | 6 | 26 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed