Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3616 g3616.t1 isoform g3616.t1 26768962 26770140
chr_3 g3616 g3616.t1 exon g3616.t1.exon1 26768962 26769191
chr_3 g3616 g3616.t1 cds g3616.t1.CDS1 26768962 26769191
chr_3 g3616 g3616.t1 exon g3616.t1.exon2 26769250 26769335
chr_3 g3616 g3616.t1 cds g3616.t1.CDS2 26769250 26769335
chr_3 g3616 g3616.t1 exon g3616.t1.exon3 26769530 26770010
chr_3 g3616 g3616.t1 cds g3616.t1.CDS3 26769530 26770010
chr_3 g3616 g3616.t1 exon g3616.t1.exon4 26770122 26770140
chr_3 g3616 g3616.t1 cds g3616.t1.CDS4 26770122 26770140
chr_3 g3616 g3616.t1 TSS g3616.t1 NA NA
chr_3 g3616 g3616.t1 TTS g3616.t1 NA NA

Sequences

>g3616.t1 Gene=g3616 Length=816
ATGGAGAATTGGAATGAAGCAATATCGAGTGATAACAAAGTAACAAATGATTTTTCGAAA
ATCAACGATAGTGAAGCACGCGAACGGTTACCTGAATCCGAAAGACATTTGGCGCTAACA
GTCGATGTTTTGACGTCTAAAGCCTGCTTAGAGGATGGCCTTGAAGATGCGACGGCACTA
TTAATCAATTTGAGTCAATGTTCGAGCTTGATAAAGTACATGATAATAATACTATTGGTA
AAAGGTGTCATTGAACTTTTTCATATAGTTCAGAAGCATATTAATAATCTGATGGTTGAA
TTGCGTGAACTGAACGAGGCGATTAAAAATGAGAAATTGAAATTCGAAACAAATAACGAT
GATTCTGATGAACTTTCAAAGCCTTCATCATCAAAAGGAATTCTCAAGGATCGTTTTACA
AAAGATACCATCATTATAACAGCTCCATCAAAAGTTAAGACATCGAATGATCTTCAAATA
CCATCTATGGCACCACTCTTAATTGGAAGAGACACAAGATCATCATGCTGTACTTGTATT
TCAACCAGCAGTCGAAGCATTCTTTATTGTTCATTCAGTGCTTCAGAAGCGCAACAAGAC
AATAATGATACAATTGAAAATGTAAATAATAATCAAGCAATTGAAGCACAGGAGAATAAT
GAGCAGCAACAGCCGCCACCACCACAAAATCAACAGCAAGCACATTTTAATATTCCAGTT
GATGAGAATGCAGCTGTAGCAGCTGTAAATGAAGGAGATGAAGCTAGAACTTCACAGCAT
GAACGTTTGTCACCAATGGATACAACACACTCATAA

>g3616.t1 Gene=g3616 Length=271
MENWNEAISSDNKVTNDFSKINDSEARERLPESERHLALTVDVLTSKACLEDGLEDATAL
LINLSQCSSLIKYMIIILLVKGVIELFHIVQKHINNLMVELRELNEAIKNEKLKFETNND
DSDELSKPSSSKGILKDRFTKDTIIITAPSKVKTSNDLQIPSMAPLLIGRDTRSSCCTCI
STSSRSILYCSFSASEAQQDNNDTIENVNNNQAIEAQENNEQQQPPPPQNQQQAHFNIPV
DENAAVAAVNEGDEARTSQHERLSPMDTTHS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
4 g3616.t1 Coils Coil Coil 94 121 -
1 g3616.t1 MobiDBLite mobidb-lite consensus disorder prediction 217 236 -
2 g3616.t1 MobiDBLite mobidb-lite consensus disorder prediction 249 271 -
3 g3616.t1 MobiDBLite mobidb-lite consensus disorder prediction 254 271 -
6 g3616.t1 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 69 -
7 g3616.t1 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 70 90 -
5 g3616.t1 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 91 271 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed