General information for g3622.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Large neutral amino acids transporter small subunit 2.
Parent gene
- The parent gene g3622 is located on chr_3: 26807465..26810846 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3622 | g3622.t1 | TTS | g3622.t1 | 26806849 | 26806849 |
| chr_3 | g3622 | g3622.t1 | isoform | g3622.t1 | 26807465 | 26810846 |
| chr_3 | g3622 | g3622.t1 | exon | g3622.t1.exon1 | 26807465 | 26807589 |
| chr_3 | g3622 | g3622.t1 | cds | g3622.t1.CDS1 | 26807465 | 26807589 |
| chr_3 | g3622 | g3622.t1 | exon | g3622.t1.exon2 | 26807657 | 26807918 |
| chr_3 | g3622 | g3622.t1 | cds | g3622.t1.CDS2 | 26807657 | 26807918 |
| chr_3 | g3622 | g3622.t1 | exon | g3622.t1.exon3 | 26807999 | 26808326 |
| chr_3 | g3622 | g3622.t1 | cds | g3622.t1.CDS3 | 26807999 | 26808326 |
| chr_3 | g3622 | g3622.t1 | exon | g3622.t1.exon4 | 26808389 | 26808421 |
| chr_3 | g3622 | g3622.t1 | cds | g3622.t1.CDS4 | 26808389 | 26808421 |
| chr_3 | g3622 | g3622.t1 | exon | g3622.t1.exon5 | 26808481 | 26808937 |
| chr_3 | g3622 | g3622.t1 | cds | g3622.t1.CDS5 | 26808481 | 26808937 |
| chr_3 | g3622 | g3622.t1 | exon | g3622.t1.exon6 | 26810810 | 26810846 |
| chr_3 | g3622 | g3622.t1 | cds | g3622.t1.CDS6 | 26810810 | 26810846 |
| chr_3 | g3622 | g3622.t1 | TSS | g3622.t1 | NA | NA |
Sequences
>g3622.t1 Gene=g3622 Length=1242
ATGCCAGTAGTGCTGTCAAAATTTATCATTCCACTAGGAACTTTAATACCATTATCAGGT
GGTGATTATGCATACATATCAGCAGCATTTGGACCACTTCCAGCATTTCTGTATCTATGG
GTTGCACTTCTTATTCTTGTACCAACAGGAAATGCCATTACAGCATTGACATTTGCACAA
TACTTATTGAAACCAAATTGGCCTGCATGCGATCCGCCTTACTCCGCCGTTACTTTTGTC
GCATGTCTTGTTACTATAGTTCTCACGGCAATAAATTGTTACAATGTTAGATGGGTGACA
CGAGTGACTGATGTATTCACGGGAACAAAGGTTTTTGCGTTGTTGGTAATTTTTTTTGCT
GGTGCCTGGTATTTATTTAGTGGCCACACAGAGCTTCTGCAGCAACCATTTGAGAACTCA
ACAACTTCTCCAGGAAGAATCGCACTTGCTTTTTATAATGGTCTCTTCAGTTATTCAGGC
TGGAATTATCTTAATTTTGTTACCGAAGAGTTAAAGGATCCCTACAAAAATTTGCCTAGA
GCCATTTGCATCAGTATTCCTATGGTCACAATAATTTATGTTATAACCAATGTTGCTTAT
TTTGCGGTACTTCCAACTAATGAAATTCAATCATCGCTTGCTGTAGCTGTAACTTTTGGT
GATAAAATGCTTCCGGGCTTTCTTGCATGGATGATGCCATTATTTGTTGCTTGCTCCACT
TTTGGTTCACTTAATGGTGCAATTTTTGCAAGCTCTCGTTTGTTCTTTGTCGGAGCTCGA
AATGGTCATTTACCAGCAGCAATTTCGCTCATAAATGTCAAATGCCTTACACCAATTCCA
TCAATTTTGTTCATGTGCCTACTTACAATCATGCTTTTGTTCATACCTGATGTTTATGCA
TTGATCAATTATGTTAGCTTCGTTGAAGCTCTGTTTATACTGATGTCAATTTCAGGACTC
TTATATTTACGCTACAAAAAACCTGATGCTCATCGACCAATCAGAGTGAATCTCATTTTT
CCTGTAATATTTATGCTAACCTGCAGCTTTCTTGTGATTGCATCATGCTTTCAAAGTCCA
GTTGAAGTCGGTATTGGATGCTTAGTTATTTTATCAGGTATTCCAGTTTATTATGCAACA
ATTCATCGACCAATCGGTTGGCTTACCAAGCTCTCATCCAGATTTAACATTTTCTGCTCA
AAGTTGTTCCTTTGTATGCCAAATCAAGAAAAAGATGATTAA
>g3622.t1 Gene=g3622 Length=413
MPVVLSKFIIPLGTLIPLSGGDYAYISAAFGPLPAFLYLWVALLILVPTGNAITALTFAQ
YLLKPNWPACDPPYSAVTFVACLVTIVLTAINCYNVRWVTRVTDVFTGTKVFALLVIFFA
GAWYLFSGHTELLQQPFENSTTSPGRIALAFYNGLFSYSGWNYLNFVTEELKDPYKNLPR
AICISIPMVTIIYVITNVAYFAVLPTNEIQSSLAVAVTFGDKMLPGFLAWMMPLFVACST
FGSLNGAIFASSRLFFVGARNGHLPAAISLINVKCLTPIPSILFMCLLTIMLLFIPDVYA
LINYVSFVEALFILMSISGLLYLRYKKPDAHRPIRVNLIFPVIFMLTCSFLVIASCFQSP
VEVGIGCLVILSGIPVYYATIHRPIGWLTKLSSRFNIFCSKLFLCMPNQEKDD
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 15 | g3622.t1 | Gene3D | G3DSA:1.20.1740.10 | - | 8 | 390 | 1.1E-70 |
| 2 | g3622.t1 | PANTHER | PTHR11785:SF516 | LD25378P | 12 | 383 | 2.6E-151 |
| 3 | g3622.t1 | PANTHER | PTHR11785 | AMINO ACID TRANSPORTER | 12 | 383 | 2.6E-151 |
| 39 | g3622.t1 | PIRSF | PIRSF006060 | AA_transporter | 8 | 393 | 7.0E-56 |
| 1 | g3622.t1 | Pfam | PF13520 | Amino acid permease | 10 | 358 | 3.5E-51 |
| 23 | g3622.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 5 | - |
| 29 | g3622.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 6 | 25 | - |
| 16 | g3622.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 26 | 36 | - |
| 31 | g3622.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 37 | 62 | - |
| 27 | g3622.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 63 | 73 | - |
| 34 | g3622.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 74 | 93 | - |
| 19 | g3622.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 94 | 104 | - |
| 37 | g3622.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 105 | 126 | - |
| 22 | g3622.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 127 | 145 | - |
| 38 | g3622.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 146 | 166 | - |
| 21 | g3622.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 167 | 177 | - |
| 33 | g3622.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 178 | 203 | - |
| 24 | g3622.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 204 | 226 | - |
| 32 | g3622.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 227 | 250 | - |
| 18 | g3622.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 251 | 270 | - |
| 28 | g3622.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 271 | 295 | - |
| 25 | g3622.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 296 | 300 | - |
| 36 | g3622.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 301 | 323 | - |
| 20 | g3622.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 324 | 334 | - |
| 35 | g3622.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 335 | 357 | - |
| 26 | g3622.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 358 | 362 | - |
| 30 | g3622.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 363 | 381 | - |
| 17 | g3622.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 382 | 413 | - |
| 14 | g3622.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 10 | 32 | - |
| 11 | g3622.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 37 | 59 | - |
| 10 | g3622.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 74 | 96 | - |
| 8 | g3622.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 105 | 127 | - |
| 6 | g3622.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 147 | 169 | - |
| 12 | g3622.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 182 | 204 | - |
| 5 | g3622.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 227 | 249 | - |
| 4 | g3622.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 269 | 291 | - |
| 9 | g3622.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 301 | 323 | - |
| 13 | g3622.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 336 | 355 | - |
| 7 | g3622.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 359 | 381 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016020 | membrane | CC |
| GO:0055085 | transmembrane transport | BP |
| GO:0022857 | transmembrane transporter activity | MF |
KEGG
Orthology
- This transcript has been annotated with K13780 (solute carrier family 7 (L-type amino acid transporter), member 5)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
