Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative 2-hydroxyacylsphingosine 1-beta-galactosyltransferase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3643 g3643.t5 TTS g3643.t5 27152250 27152250
chr_3 g3643 g3643.t5 isoform g3643.t5 27152297 27154390
chr_3 g3643 g3643.t5 exon g3643.t5.exon1 27152297 27153406
chr_3 g3643 g3643.t5 cds g3643.t5.CDS1 27152815 27153406
chr_3 g3643 g3643.t5 exon g3643.t5.exon2 27153888 27154158
chr_3 g3643 g3643.t5 cds g3643.t5.CDS2 27153888 27154158
chr_3 g3643 g3643.t5 exon g3643.t5.exon3 27154220 27154390
chr_3 g3643 g3643.t5 cds g3643.t5.CDS3 27154220 27154301
chr_3 g3643 g3643.t5 TSS g3643.t5 27154486 27154486

Sequences

>g3643.t5 Gene=g3643 Length=1552
GTTTGATTCCATTTGGTAGCAAATCTCATTTTGCTATAGGAAACAGTATTTTAAGAACAC
TTCAAAATGCTGGTCATGATGTTACAGTTATGACTGCATTTCCTTCTAAGAAGCAAGAAC
AAAACTATCGTGAAATTAAATTAACTAAAATTATGGAAGTTTTCGACCGAGGTGACGAAG
TTAATCCATTTATTTTTGGTCAGTTACCAGCTATTATGACATTTTTTTTGATATCAAAAA
TGAACACTGATGTTGTTGACTTGTTTATGCAAGAGCTAGAAGTTCAAAAGTTTCTTGAAG
AAGATAAAAGCAAATATGATATTTGTTTGTTTGAAATTTTTATGGTAGATGCATTATTAG
GAATTCCAGAGAGATATGGTTGTCATTTGATTTCATACACAACATTTGCAGCAGTTAGAT
GGACTGATGATATGACAGGATTAGAATCCCCAGCATCTTATGTACCAAATCCTTTCTTAA
AATATACTGATAAAATGTCATTTGGAGAAAGACTTTGGAATTCAGCATTTTCTCTTGTTG
AGCGATTTATTTATCATTTCTATCATTTACCAAATCATCGTAAACGTTACAAAAAATATT
TCCCAGATGCTAAACGCAGTTTTGAAGAAATGTATAAGGGATCATCTATAATATTTTCTA
ATACTCATGTCAGTTCTTCAACGGTCCGTCCATTTATGCCTAATGTAATAGAAATAGCTG
GTATCCATATGAAACCTGCTCAACTTTTACCAAAGGACATACAAGAATTCCTTGATTCAG
CTACAGATGGTGCAATTCTATTCTCCATGGGATCATTCATTCAAAGTAAAATGTGGCCGG
TAGAGAAGCGTGATGCATTGATAAAAGCTTTCGGAAAATTAAATCTTAAAGTAATATGGA
AGTATGAGAATGAAACATTACCTAATAATCCTGGTAATATCAAAATAAGTTCGTGGTTGC
CACAAAGAGATATTTTGGCTCACAAAAATATAAAACTGTTTATCACACATGGTGGACTAT
TAGGAACAACGTAATTGCTTTTTAAATATTTGTTTTCTTCAATTGTTTAATTTGAAAATT
TTATTTTAGTGAAGCATTAGTTGAAGGTGTACCTGTTTTAGGATTACCAATTTTTGGAGA
TCAAAAAATGAACATGGCAAAGACAGTGCTTCGTGGCTATGGTTTACAAATCTCTTTTCA
AGATATAGAAGAACAAAGAGTATCGGATGCTATTAATGAGCTTTTAACAAATCCAAAATA
CAAAGAGAATGCAATGACTGTTTCAAAGAGATTTATTGACAGACCAATGACACCGCAAGA
ATCTGTTGTTTATTGGACGGAATATGTAGCAAGGCATGATGGTGCACATCATTTAAGAGC
ATATTCCACTCAATTAAATTTTATAGAATTTCATATGTTTGATGTTTATGGGGCTCTTAT
TTTAATTGCACTTGTTATAATGTACATTCAATTTTTAGTATTGAGGGCAATTTTAAGGAA
AATTTTTAAAAGAAAAAATTCTAAAAGTGAAAATAAAATTAAAAAAAATTGA

>g3643.t5 Gene=g3643 Length=314
MTAFPSKKQEQNYREIKLTKIMEVFDRGDEVNPFIFGQLPAIMTFFLISKMNTDVVDLFM
QELEVQKFLEEDKSKYDICLFEIFMVDALLGIPERYGCHLISYTTFAAVRWTDDMTGLES
PASYVPNPFLKYTDKMSFGERLWNSAFSLVERFIYHFYHLPNHRKRYKKYFPDAKRSFEE
MYKGSSIIFSNTHVSSSTVRPFMPNVIEIAGIHMKPAQLLPKDIQEFLDSATDGAILFSM
GSFIQSKMWPVEKRDALIKAFGKLNLKVIWKYENETLPNNPGNIKISSWLPQRDILAHKN
IKLFITHGGLLGTT

Protein features from InterProScan

Transcript Database ID Name Start End E.value
6 g3643.t5 CDD cd03784 GT1_Gtf-like 23 314 0
5 g3643.t5 Gene3D G3DSA:3.40.50.2000 Glycogen Phosphorylase B; 215 314 0
2 g3643.t5 PANTHER PTHR48043 EG:EG0003.4 PROTEIN-RELATED 4 314 0
3 g3643.t5 PANTHER PTHR48043:SF114 DOROTHY, ISOFORM A-RELATED 4 314 0
1 g3643.t5 Pfam PF00201 UDP-glucoronosyl and UDP-glucosyl transferase 101 311 0
4 g3643.t5 SUPERFAMILY SSF53756 UDP-Glycosyltransferase/glycogen phosphorylase 38 313 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0008194 UDP-glycosyltransferase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed