General information for g3644.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g3644 is located on chr_3: 27155345..27156526 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3644 | g3644.t1 | isoform | g3644.t1 | 27155345 | 27156526 |
| chr_3 | g3644 | g3644.t1 | exon | g3644.t1.exon1 | 27155345 | 27155491 |
| chr_3 | g3644 | g3644.t1 | cds | g3644.t1.CDS1 | 27155345 | 27155491 |
| chr_3 | g3644 | g3644.t1 | exon | g3644.t1.exon2 | 27155544 | 27155829 |
| chr_3 | g3644 | g3644.t1 | cds | g3644.t1.CDS2 | 27155544 | 27155829 |
| chr_3 | g3644 | g3644.t1 | exon | g3644.t1.exon3 | 27155889 | 27155971 |
| chr_3 | g3644 | g3644.t1 | cds | g3644.t1.CDS3 | 27155889 | 27155971 |
| chr_3 | g3644 | g3644.t1 | exon | g3644.t1.exon4 | 27156036 | 27156220 |
| chr_3 | g3644 | g3644.t1 | cds | g3644.t1.CDS4 | 27156036 | 27156220 |
| chr_3 | g3644 | g3644.t1 | exon | g3644.t1.exon5 | 27156283 | 27156526 |
| chr_3 | g3644 | g3644.t1 | cds | g3644.t1.CDS5 | 27156283 | 27156526 |
| chr_3 | g3644 | g3644.t1 | TSS | g3644.t1 | 27156552 | 27156552 |
| chr_3 | g3644 | g3644.t1 | TTS | g3644.t1 | NA | NA |
Sequences
>g3644.t1 Gene=g3644 Length=945
ATGAAGTTTTTAAAATATTTAATTTATTTTCTTGGGTTATTTTTTGTAAATTCAACAAAT
GGTTTAAATATTCTTGCAATTTTTCCATTATCTATGAAATCACATTACGCAATAGGTTTT
TCGATTGTAAAAAGTCTTTTGGATGTAGGTCACAATGTGACCGCAATTTCAACTTTAAAA
CCTGATAAACAAATTGAAAATTATCAAATTATTTCTATTCCTGACGTTATGGAAGAATTT
AAAGAACAAGAACCGAATCCTTTTGAATTTATACATATGCCAATTATTATGTCCATGTTG
ATGATGCCTAAGTTTGGAATAGATATGGTAAATTCTGTAATGAAATCTGAAGAGCTTCAC
ATGTTTTTGAAAAGTAATGATAAGTTTGATATTTGCATTATGGAACTTTTTGGTGATGAA
GCATTACTGGGTATTCCTGAAAAATTTGATTGTATTTTGCTTCTCTATATGACGTTTGAT
TCTTTTGTTTGGAGCGATAATATTGTAGGAAATCAATCACCTGGTTCTTATGTTCCTAAT
CCTTATCTTCATTATACTGATAAAATGACATATATGGAAAGAGTATGGAATGAGTTTGTC
AATTTATTTGATAAAACACTCTATTATGGCTATCACCTTCCGCGTCAACGAGAATTATAT
AATAAATATTTTCCAAATGCTAAAAGAACTTTTGATGAAATGTATAGAAATTCTTCAATC
ATTTTCATTAATAATCATGTCAGTCATTCATTTCCACGACCTCATCAACCAACACAAATT
GAAATTGGCGGAATTCATCAAACGGATGGTGCAATTCTATTTTCAATGGGTTCCTATATC
GATGGCACTGATTGGCCACTAGAAAAGCGTGATGCTTTTATTAAAGTATTTGGAAAATTG
AAACAGAAAGTTATTTGGAGATATAGTAATGAAACATTACCTTAA
>g3644.t1 Gene=g3644 Length=314
MKFLKYLIYFLGLFFVNSTNGLNILAIFPLSMKSHYAIGFSIVKSLLDVGHNVTAISTLK
PDKQIENYQIISIPDVMEEFKEQEPNPFEFIHMPIIMSMLMMPKFGIDMVNSVMKSEELH
MFLKSNDKFDICIMELFGDEALLGIPEKFDCILLLYMTFDSFVWSDNIVGNQSPGSYVPN
PYLHYTDKMTYMERVWNEFVNLFDKTLYYGYHLPRQRELYNKYFPNAKRTFDEMYRNSSI
IFINNHVSHSFPRPHQPTQIEIGGIHQTDGAILFSMGSYIDGTDWPLEKRDAFIKVFGKL
KQKVIWRYSNETLP
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g3644.t1 | PANTHER | PTHR48043 | EG:EG0003.4 PROTEIN-RELATED | 14 | 314 | 3.9E-44 |
| 3 | g3644.t1 | PANTHER | PTHR48043:SF114 | DOROTHY, ISOFORM A-RELATED | 14 | 314 | 3.9E-44 |
| 1 | g3644.t1 | Pfam | PF00201 | UDP-glucoronosyl and UDP-glucosyl transferase | 169 | 266 | 4.5E-10 |
| 7 | g3644.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 5 | - |
| 8 | g3644.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 6 | 28 | - |
| 6 | g3644.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 29 | 314 | - |
| 5 | g3644.t1 | SUPERFAMILY | SSF53756 | UDP-Glycosyltransferase/glycogen phosphorylase | 23 | 310 | 1.75E-40 |
| 4 | g3644.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 7 | 29 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008194 | UDP-glycosyltransferase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed