General information for g3645.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative 2-hydroxyacylsphingosine 1-beta-galactosyltransferase.
Parent gene
- The parent gene g3645 is located on chr_3: 27156706..27157388 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3645 | g3645.t1 | isoform | g3645.t1 | 27156706 | 27157388 |
| chr_3 | g3645 | g3645.t1 | exon | g3645.t1.exon1 | 27156706 | 27157150 |
| chr_3 | g3645 | g3645.t1 | cds | g3645.t1.CDS1 | 27156706 | 27157150 |
| chr_3 | g3645 | g3645.t1 | exon | g3645.t1.exon2 | 27157210 | 27157388 |
| chr_3 | g3645 | g3645.t1 | cds | g3645.t1.CDS2 | 27157210 | 27157388 |
| chr_3 | g3645 | g3645.t1 | TSS | g3645.t1 | NA | NA |
| chr_3 | g3645 | g3645.t1 | TTS | g3645.t1 | NA | NA |
Sequences
>g3645.t1 Gene=g3645 Length=624
ATGCTTTTTATTAAAGTATTTGGAAAATTGAAACAGAAAGTTATTTGGAGATATAGTAAT
GAAACATTACCTAATAATCCTGGTAATATTAAAATAAGTTCATGGTTGCCACAAAGAGAT
ATTTTGGCTCCACAAAATATAAAACTGTTTATCACACATGGTGGACTATTAGGAACAACT
GAAGCAGTAGTTGAAGGTGTACCTATTTTAGGAATTCCAGTGTTTGGAGATCAAAAAATG
AACATGGCTAAAGCATCAGCACGTGGTTATGGAATTAAATTAGTTTATAAAGAACTAAAC
GAAAGGAATTTTGCAGAAGCAATTGAAGAATTATTAAATAATCCAACATACAAAGAAACA
GCTGTGAAAGTTTCAAAAATGTTCAATGATCGACCAATGACACCACAAGAAGCAGTTGTT
TATTGGACGGAATATGCTGTAAGACATCAAGGTGCACCACATTTGATAGCTCAAGCCACT
AAAATGAACTTTATTTCTTTAAATTTAATTGATGTTTATTTTGTGCTATCTATTGGATTT
TTATTAATTTTATACCTTAATTTTGTTTTCTTAAGAAAAATGTTGAGAAAAATATTTAAA
GTTGTTAAAAGCAAAAAAGAATAG
>g3645.t1 Gene=g3645 Length=207
MLFIKVFGKLKQKVIWRYSNETLPNNPGNIKISSWLPQRDILAPQNIKLFITHGGLLGTT
EAVVEGVPILGIPVFGDQKMNMAKASARGYGIKLVYKELNERNFAEAIEELLNNPTYKET
AVKVSKMFNDRPMTPQEAVVYWTEYAVRHQGAPHLIAQATKMNFISLNLIDVYFVLSIGF
LLILYLNFVFLRKMLRKIFKVVKSKKE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g3645.t1 | CDD | cd03784 | GT1_Gtf-like | 1 | 142 | 2.63562E-38 |
| 5 | g3645.t1 | Gene3D | G3DSA:3.40.50.2000 | Glycogen Phosphorylase B; | 1 | 130 | 5.5E-35 |
| 2 | g3645.t1 | PANTHER | PTHR48043:SF60 | UDP-GLUCURONOSYLTRANSFERASE | 2 | 192 | 8.1E-64 |
| 3 | g3645.t1 | PANTHER | PTHR48043 | EG:EG0003.4 PROTEIN-RELATED | 2 | 192 | 8.1E-64 |
| 1 | g3645.t1 | Pfam | PF00201 | UDP-glucoronosyl and UDP-glucosyl transferase | 6 | 202 | 3.9E-50 |
| 7 | g3645.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 171 | - |
| 8 | g3645.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 172 | 191 | - |
| 6 | g3645.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 192 | 207 | - |
| 11 | g3645.t1 | ProSitePatterns | PS00375 | UDP-glycosyltransferases signature. | 35 | 78 | - |
| 4 | g3645.t1 | SUPERFAMILY | SSF53756 | UDP-Glycosyltransferase/glycogen phosphorylase | 3 | 155 | 3.49E-50 |
| 10 | g3645.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 169 | 191 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008194 | UDP-glycosyltransferase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed