General information for g3646.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g3646 is located on chr_3: 27157409..27158519 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3646 | g3646.t1 | isoform | g3646.t1 | 27157409 | 27158519 |
| chr_3 | g3646 | g3646.t1 | exon | g3646.t1.exon1 | 27157409 | 27157799 |
| chr_3 | g3646 | g3646.t1 | cds | g3646.t1.CDS1 | 27157409 | 27157799 |
| chr_3 | g3646 | g3646.t1 | exon | g3646.t1.exon2 | 27157881 | 27157963 |
| chr_3 | g3646 | g3646.t1 | cds | g3646.t1.CDS2 | 27157881 | 27157963 |
| chr_3 | g3646 | g3646.t1 | exon | g3646.t1.exon3 | 27158029 | 27158219 |
| chr_3 | g3646 | g3646.t1 | cds | g3646.t1.CDS3 | 27158029 | 27158219 |
| chr_3 | g3646 | g3646.t1 | exon | g3646.t1.exon4 | 27158282 | 27158519 |
| chr_3 | g3646 | g3646.t1 | cds | g3646.t1.CDS4 | 27158282 | 27158519 |
| chr_3 | g3646 | g3646.t1 | TSS | g3646.t1 | NA | NA |
| chr_3 | g3646 | g3646.t1 | TTS | g3646.t1 | NA | NA |
Sequences
>g3646.t1 Gene=g3646 Length=903
ATGAGAAGTTTTTGTCTACTCATATCACTTTTTTCAATTTTTACCATATCAAGTCATGGT
CTTAACATTTTGGCAATTTTACCTTTATCTATGAAATCTCATTATGCTATTGGTAACTCA
ATTGTCAAAAATCTACTCAATGCAGGTCATAATGTAACATCAATAACTATGTTTGAACCT
GAACAGCCAATTAACAATTATCGAGTCATTCACATTCCTGATACAATGAATGTTTCTGGT
TGGGGTGATATGAATCCGTTGGACTATAATGATATTCCAATTTTATTATCTGTTGTTATG
ATGCCAATGATGGGAGCTGATATGATAAATGAAATTATGAAATCCGAGGAACTCAATGAA
TTTTTGGAAAGACAAGATGAAAATTTTGATGTCTGCATTTTGGAGATTTTTACATCAGAA
GCTCTTTTGGGTATTGTTGAAAAATATAATTGTGTATTGATACAATATACAACTTTTGAT
GCATTTATTTGGATTGATAAAATGACAGGAAATGAATCTCCACCATCCTATGTTCCTCAT
CCGTTTCTTGAATACACTGACAATATGAGTTTTGTTCAACGATTTTATAATAAATTTTTT
GTATTGATCGATGACTTTTTTTACAACTTTCTGCATATTCCATGGCAAAAATTTTTGTAT
CGAAAGTATTTTCCAAATGCTAAAAGAACTTTTGATGAAATGTATAGAAATTCTTCAATC
ATTTTCATTAATAATCATGTCAGTCATTCATTTCCACGACCTCATCACCAAACACAAATT
GAAATTGGCGGAATTCATGTAAAACCAGCAAAAACGTTCGCCAAAAGATTTTCAAGATTT
TCTCGATTCAGCAACGGATGGTGCAATTCTATTTTCAATGGGTTCCTATATCGATGGCAC
TGA
>g3646.t1 Gene=g3646 Length=300
MRSFCLLISLFSIFTISSHGLNILAILPLSMKSHYAIGNSIVKNLLNAGHNVTSITMFEP
EQPINNYRVIHIPDTMNVSGWGDMNPLDYNDIPILLSVVMMPMMGADMINEIMKSEELNE
FLERQDENFDVCILEIFTSEALLGIVEKYNCVLIQYTTFDAFIWIDKMTGNESPPSYVPH
PFLEYTDNMSFVQRFYNKFFVLIDDFFYNFLHIPWQKFLYRKYFPNAKRTFDEMYRNSSI
IFINNHVSHSFPRPHHQTQIEIGGIHVKPAKTFAKRFSRFSRFSNGWCNSIFNGFLYRWH
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g3646.t1 | PANTHER | PTHR48043 | EG:EG0003.4 PROTEIN-RELATED | 14 | 272 | 4.7E-35 |
| 3 | g3646.t1 | PANTHER | PTHR48043:SF114 | DOROTHY, ISOFORM A-RELATED | 14 | 272 | 4.7E-35 |
| 1 | g3646.t1 | Pfam | PF00201 | UDP-glucoronosyl and UDP-glucosyl transferase | 125 | 282 | 5.9E-14 |
| 8 | g3646.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 20 | - |
| 9 | g3646.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 3 | - |
| 10 | g3646.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 4 | 16 | - |
| 11 | g3646.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 17 | 20 | - |
| 7 | g3646.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 21 | 300 | - |
| 5 | g3646.t1 | SUPERFAMILY | SSF53756 | UDP-Glycosyltransferase/glycogen phosphorylase | 21 | 282 | 6.28E-33 |
| 6 | g3646.t1 | SignalP_EUK | SignalP-TM | SignalP-TM | 1 | 20 | - |
| 4 | g3646.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 7 | 29 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008194 | UDP-glycosyltransferase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed