General information for g3678.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Elongation of very long chain fatty acids protein AAEL008004.
Parent gene
- The parent gene g3678 is located on chr_3: 27358697..27363908 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3678 | g3678.t1 | TTS | g3678.t1 | 27358172 | 27358172 |
| chr_3 | g3678 | g3678.t1 | isoform | g3678.t1 | 27358697 | 27363537 |
| chr_3 | g3678 | g3678.t1 | exon | g3678.t1.exon1 | 27358697 | 27358888 |
| chr_3 | g3678 | g3678.t1 | cds | g3678.t1.CDS1 | 27358697 | 27358888 |
| chr_3 | g3678 | g3678.t1 | exon | g3678.t1.exon2 | 27359956 | 27360092 |
| chr_3 | g3678 | g3678.t1 | cds | g3678.t1.CDS2 | 27359956 | 27360092 |
| chr_3 | g3678 | g3678.t1 | exon | g3678.t1.exon3 | 27360186 | 27360348 |
| chr_3 | g3678 | g3678.t1 | cds | g3678.t1.CDS3 | 27360186 | 27360348 |
| chr_3 | g3678 | g3678.t1 | exon | g3678.t1.exon4 | 27361463 | 27361543 |
| chr_3 | g3678 | g3678.t1 | cds | g3678.t1.CDS4 | 27361463 | 27361543 |
| chr_3 | g3678 | g3678.t1 | exon | g3678.t1.exon5 | 27361611 | 27361691 |
| chr_3 | g3678 | g3678.t1 | cds | g3678.t1.CDS5 | 27361611 | 27361691 |
| chr_3 | g3678 | g3678.t1 | exon | g3678.t1.exon6 | 27361771 | 27361880 |
| chr_3 | g3678 | g3678.t1 | cds | g3678.t1.CDS6 | 27361771 | 27361880 |
| chr_3 | g3678 | g3678.t1 | exon | g3678.t1.exon7 | 27363393 | 27363537 |
| chr_3 | g3678 | g3678.t1 | cds | g3678.t1.CDS7 | 27363393 | 27363537 |
| chr_3 | g3678 | g3678.t1 | TSS | g3678.t1 | 27363908 | 27363908 |
Sequences
>g3678.t1 Gene=g3678 Length=909
ATGAATAATTATACAGACTTTGATGGATTTCATGGATTTCAAAAGAATTTTGTCAAAATG
GCAATTGATGAATACTACTCTCCTCAACAAAACTGGCCAGACTTAGTTTTAAGATACTGG
ACTGTTATTGATGAAAGATTAGGAGATAGTAGAGCTAAAAATTATCCATTTATCACAACA
CCATTAGCAACGATAGGATTTGTACTTATATATCTCACATGGGTTTGTGTTATTGGACCA
TTTTATATGCGTGATAAAAAACCGTATAACCTTCGTAGTACTCTTATCTATTATAATGCT
TTTCAAGTTTTCCTTAGTGCTTACATGTTTTATGAGCATTTGATGGCTGGGTGGATCAAA
GGATATAGTTTTACATGTCAAACTGTTGATTATTCTGATAATTATCTATCTAGACGAATG
ATGAATCTTTGTTATGTATATTATTTATCTAAATTGACTGAGTTTGCGGACACAATTTTC
TTTGTGTTACGTAAGAAGAAGTCGCAGATTACTTGGTTGCATTTATATCATCACTCATTG
ACACCATTAGAAGCTTGGATTCTAGTGAGGTTCATTGCCGGTGGAAATGCAACATTCCCG
AATATTTTAAATAACTTTGTACATATTTTAATGTATTTTTACTACATGCTTTCTGCAATG
GGTCCACAATATCAAAAATATTTGTGGTGGAAGAAGTACATGACTGAAATTCAAATAGCA
CAATTTGTCCTTTGCATCTTCCACAATATTAGAGCTTTGTGCACTGGTTGTGCATTTCCA
CCATTTATGTCATCGCTGCTTCTTATCAACTCTATCATCTTCTTTATTCTCTTCATGAAC
TTTTATATTCAAAACTTTTATAAGAGAAAATCAGCTGAACAAGCAACAGAAAAACACAAA
GCTCAGTAA
>g3678.t1 Gene=g3678 Length=302
MNNYTDFDGFHGFQKNFVKMAIDEYYSPQQNWPDLVLRYWTVIDERLGDSRAKNYPFITT
PLATIGFVLIYLTWVCVIGPFYMRDKKPYNLRSTLIYYNAFQVFLSAYMFYEHLMAGWIK
GYSFTCQTVDYSDNYLSRRMMNLCYVYYLSKLTEFADTIFFVLRKKKSQITWLHLYHHSL
TPLEAWILVRFIAGGNATFPNILNNFVHILMYFYYMLSAMGPQYQKYLWWKKYMTEIQIA
QFVLCIFHNIRALCTGCAFPPFMSSLLLINSIIFFILFMNFYIQNFYKRKSAEQATEKHK
AQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g3678.t1 | PANTHER | PTHR11157 | FATTY ACID ACYL TRANSFERASE-RELATED | 13 | 297 | 5.0E-145 |
| 3 | g3678.t1 | PANTHER | PTHR11157:SF22 | ELONGATION OF VERY LONG CHAIN FATTY ACIDS PROTEIN | 13 | 297 | 5.0E-145 |
| 1 | g3678.t1 | Pfam | PF01151 | GNS1/SUR4 family | 59 | 293 | 3.3E-56 |
| 14 | g3678.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 61 | - |
| 18 | g3678.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 62 | 83 | - |
| 10 | g3678.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 84 | 94 | - |
| 17 | g3678.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 95 | 111 | - |
| 13 | g3678.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 112 | 144 | - |
| 23 | g3678.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 145 | 163 | - |
| 12 | g3678.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 164 | 174 | - |
| 20 | g3678.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 175 | 193 | - |
| 15 | g3678.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 194 | 204 | - |
| 22 | g3678.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 205 | 221 | - |
| 9 | g3678.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 222 | 232 | - |
| 21 | g3678.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 233 | 250 | - |
| 16 | g3678.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 251 | 261 | - |
| 19 | g3678.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 262 | 283 | - |
| 11 | g3678.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 284 | 302 | - |
| 6 | g3678.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 60 | 82 | - |
| 4 | g3678.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 95 | 117 | - |
| 5 | g3678.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 141 | 163 | - |
| 8 | g3678.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 202 | 224 | - |
| 7 | g3678.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 261 | 283 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016021 | integral component of membrane | CC |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
