Gene loci information

Transcript annotation

  • This transcript has been annotated as Elongation of very long chain fatty acids protein AAEL008004.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3679 g3679.t12 TSS g3679.t12 27378040 27378040
chr_3 g3679 g3679.t12 isoform g3679.t12 27378198 27379743
chr_3 g3679 g3679.t12 exon g3679.t12.exon1 27378198 27378261
chr_3 g3679 g3679.t12 cds g3679.t12.CDS1 27378198 27378261
chr_3 g3679 g3679.t12 exon g3679.t12.exon2 27378330 27378520
chr_3 g3679 g3679.t12 cds g3679.t12.CDS2 27378330 27378520
chr_3 g3679 g3679.t12 exon g3679.t12.exon3 27378591 27378671
chr_3 g3679 g3679.t12 cds g3679.t12.CDS3 27378591 27378671
chr_3 g3679 g3679.t12 exon g3679.t12.exon4 27379013 27379312
chr_3 g3679 g3679.t12 cds g3679.t12.CDS4 27379013 27379312
chr_3 g3679 g3679.t12 exon g3679.t12.exon5 27379402 27379521
chr_3 g3679 g3679.t12 cds g3679.t12.CDS5 27379402 27379521
chr_3 g3679 g3679.t12 exon g3679.t12.exon6 27379633 27379743
chr_3 g3679 g3679.t12 cds g3679.t12.CDS6 27379633 27379743
chr_3 g3679 g3679.t12 TTS g3679.t12 27380148 27380148

Sequences

>g3679.t12 Gene=g3679 Length=867
ATGGATAATAGTACAACGAGCGCTATAGCAAAATATTGGGACTATTTGTTTGTTAAGTTG
GCAGATGAGCGAACAAATGAATGGCCATTGATTAAATCACCGTTCCCAGGTCTCACAATT
ATTGCACTTTATCTATACTTCGTAAATGTGGCTGGACCACGATTTATGAAGGATCGTAAA
CCTTTTCAAATGAAGAAAACCTTAATTGTGTATAATTTCCTGCAAGTACTTGTCAGTGTA
TATCTTTTCGTAGAGGGCATGAATGGTGGATGGCTTAGACACTACTCTTGGAGATGTCAA
CCTGTAGACACATCCAGAAGTGAATTTGGAATGAGAGAAGCACGCGGCTGCTATGTATAT
TTCATTGCCAAACTTACTGAACTCTTGGACACAATTTTCTTTGTACTTCGAAAAAAAGAT
AATCAGGTGTCTTTTCTGCATCTGTATCATCACACAGTAATGCCCATGATTTCATGGGGT
TGTACTAAGTATTTCCCTGGCGGCCATGGTACTTTTATCGGCGTAATTAACTCTTTTGTT
CATATTGTTATGTACTTTTACTATATGATGGCTGCTATGGGACCTGAATTCCATAAATAT
TTATGGTGGAAACATTGGATCACTAACTTACAAATGATTCAATTCGGTATGGCTTTCTTG
CACTCTGCTCAATTATTATACACAGATTGCGGTTATCCACGCTGGTCTGTCTGCTTCACA
CTGCCAAATGCTATCTTTTTCTACATGCTCTTTAACGTTGCAAATGGAAAAATTAAGCAA
GCAAATGGCAAAACAAACGGTCACATTGTACATGATATCAATCACAACGAAACAAAGCCT
GATGAGGATAAAAGAAAAAGTGAATAG

>g3679.t12 Gene=g3679 Length=288
MDNSTTSAIAKYWDYLFVKLADERTNEWPLIKSPFPGLTIIALYLYFVNVAGPRFMKDRK
PFQMKKTLIVYNFLQVLVSVYLFVEGMNGGWLRHYSWRCQPVDTSRSEFGMREARGCYVY
FIAKLTELLDTIFFVLRKKDNQVSFLHLYHHTVMPMISWGCTKYFPGGHGTFIGVINSFV
HIVMYFYYMMAAMGPEFHKYLWWKHWITNLQMIQFGMAFLHSAQLLYTDCGYPRWSVCFT
LPNAIFFYMLFNVANGKIKQANGKTNGHIVHDINHNETKPDEDKRKSE

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g3679.t12 PANTHER PTHR11157 FATTY ACID ACYL TRANSFERASE-RELATED 8 257 4.2E-140
3 g3679.t12 PANTHER PTHR11157:SF153 ELONGATION OF VERY LONG CHAIN FATTY ACIDS PROTEIN 8 257 4.2E-140
1 g3679.t12 Pfam PF01151 GNS1/SUR4 family 30 251 9.5E-59
15 g3679.t12 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 34 -
18 g3679.t12 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 35 56 -
12 g3679.t12 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 57 67 -
17 g3679.t12 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 68 84 -
13 g3679.t12 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 85 117 -
23 g3679.t12 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 118 136 -
9 g3679.t12 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 137 147 -
22 g3679.t12 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 148 165 -
16 g3679.t12 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 166 170 -
21 g3679.t12 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 171 188 -
10 g3679.t12 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 189 199 -
20 g3679.t12 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 200 220 -
14 g3679.t12 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 221 231 -
19 g3679.t12 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 232 251 -
11 g3679.t12 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 252 288 -
8 g3679.t12 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 34 56 -
7 g3679.t12 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 68 87 -
5 g3679.t12 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 165 187 -
4 g3679.t12 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 200 222 -
6 g3679.t12 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 232 254 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016021 integral component of membrane CC

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed