Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3679 g3679.t15 TSS g3679.t15 27378040 27378040
chr_3 g3679 g3679.t15 isoform g3679.t15 27378198 27379743
chr_3 g3679 g3679.t15 exon g3679.t15.exon1 27378198 27378520
chr_3 g3679 g3679.t15 exon g3679.t15.exon2 27378591 27378675
chr_3 g3679 g3679.t15 exon g3679.t15.exon3 27379013 27379164
chr_3 g3679 g3679.t15 exon g3679.t15.exon4 27379224 27379312
chr_3 g3679 g3679.t15 cds g3679.t15.CDS1 27379244 27379312
chr_3 g3679 g3679.t15 exon g3679.t15.exon5 27379402 27379533
chr_3 g3679 g3679.t15 cds g3679.t15.CDS2 27379402 27379533
chr_3 g3679 g3679.t15 exon g3679.t15.exon6 27379600 27379743
chr_3 g3679 g3679.t15 cds g3679.t15.CDS3 27379600 27379743
chr_3 g3679 g3679.t15 TTS g3679.t15 27380148 27380148

Sequences

>g3679.t15 Gene=g3679 Length=925
ATGGATAATAGTACAACGAGCGCTATAGCAAAATATTGGGACTATTTGTTTGTTAAGTTG
GCAGGTGTGTATAAGAAAAATGATTATGGAAATTTTCTTGTTCAAGACTAATATGATGTT
CTTTTACTGTAGATGAGCGAACAAATGAATGGCCATTGATTAAATCACCGTTCCCAGGTC
TCACAATTATTGCACTTTATCTATACTTCGTAAATGTGGCTGGACCACGATTTATGAAGG
ATCGTAAACCTTTTCAAATGAAGAAAACCTTAATTGTGTATAATTTCCTGCAAGTACTTG
TCAGTGTATATCTTTTCGTAGAGGGCATGAATGGTGGATGGCTTAGACACTACTCTTGGA
GATGTCAACCTGTAGACACATCCAGAAGTGAATTTGGAATGAGAGTAAGAAGCACGCGGC
TGCTATGTATATTTCATTGCCAAACTTACTGAACTCTTGGACACAATTTTCTTTGTACTT
CGAAAAAAAGATAATCAGGTGTCTTTTCTGCATCTGTATCATCACACAGTAATGCCCATG
ATTTCATGGGGTTGTACTAATTATGTACTTTTACTATATGATGGCTGCTATGGGACCTGA
ATTCCATAAATATTTATGGTGGAAACATTGGATCACTAACTTACAAATGATTCAATTCGG
TATGGCTTTCTTGCACTCTGCTCAATTATTATACACAGATTGCGGTTATCCACGCTGGTC
TGTCTGCTTCACACTGCCAAATGCTATCTTTTTCTACATGCTCTTTAACGATTTTTACAA
GAAATCATATACGAAGAAAGGTAAGGGAAAGAAGGTTGCAAATGGAAAAATTAAGCAAGC
AAATGGCAAAACAAACGGTCACATTGTACATGATATCAATCACAACGAAACAAAGCCTGA
TGAGGATAAAAGAAAAAGTGAATAG

>g3679.t15 Gene=g3679 Length=114
MAAMGPEFHKYLWWKHWITNLQMIQFGMAFLHSAQLLYTDCGYPRWSVCFTLPNAIFFYM
LFNDFYKKSYTKKGKGKKVANGKIKQANGKTNGHIVHDINHNETKPDEDKRKSE

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g3679.t15 MobiDBLite mobidb-lite consensus disorder prediction 81 114 -
6 g3679.t15 MobiDBLite mobidb-lite consensus disorder prediction 96 114 -
2 g3679.t15 PANTHER PTHR11157 FATTY ACID ACYL TRANSFERASE-RELATED 1 79 2.7E-40
3 g3679.t15 PANTHER PTHR11157:SF153 ELONGATION OF VERY LONG CHAIN FATTY ACIDS PROTEIN 1 79 2.7E-40
1 g3679.t15 Pfam PF01151 GNS1/SUR4 family 3 77 1.9E-13
8 g3679.t15 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 11 -
12 g3679.t15 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 12 31 -
10 g3679.t15 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 32 42 -
11 g3679.t15 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 43 62 -
9 g3679.t15 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 63 114 -
5 g3679.t15 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 12 34 -
4 g3679.t15 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 44 66 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016021 integral component of membrane CC

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed