General information for g3681.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Proton-coupled amino acid transporter-like protein pathetic.
Parent gene
- The parent gene g3681 is located on chr_3: 27393447..27394647 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3681 | g3681.t1 | TSS | g3681.t1 | 27390193 | 27390193 |
| chr_3 | g3681 | g3681.t1 | isoform | g3681.t1 | 27390219 | 27394068 |
| chr_3 | g3681 | g3681.t1 | exon | g3681.t1.exon1 | 27390219 | 27390227 |
| chr_3 | g3681 | g3681.t1 | cds | g3681.t1.CDS1 | 27390219 | 27390227 |
| chr_3 | g3681 | g3681.t1 | exon | g3681.t1.exon2 | 27390295 | 27390365 |
| chr_3 | g3681 | g3681.t1 | cds | g3681.t1.CDS2 | 27390295 | 27390365 |
| chr_3 | g3681 | g3681.t1 | exon | g3681.t1.exon3 | 27391844 | 27391988 |
| chr_3 | g3681 | g3681.t1 | cds | g3681.t1.CDS3 | 27391844 | 27391988 |
| chr_3 | g3681 | g3681.t1 | exon | g3681.t1.exon4 | 27392559 | 27393108 |
| chr_3 | g3681 | g3681.t1 | cds | g3681.t1.CDS4 | 27392559 | 27393108 |
| chr_3 | g3681 | g3681.t1 | exon | g3681.t1.exon5 | 27393169 | 27393185 |
| chr_3 | g3681 | g3681.t1 | cds | g3681.t1.CDS5 | 27393169 | 27393185 |
| chr_3 | g3681 | g3681.t1 | exon | g3681.t1.exon6 | 27393244 | 27393325 |
| chr_3 | g3681 | g3681.t1 | cds | g3681.t1.CDS6 | 27393244 | 27393325 |
| chr_3 | g3681 | g3681.t1 | exon | g3681.t1.exon7 | 27393449 | 27394068 |
| chr_3 | g3681 | g3681.t1 | cds | g3681.t1.CDS7 | 27393449 | 27394068 |
| chr_3 | g3681 | g3681.t1 | TTS | g3681.t1 | 27394504 | 27394504 |
Sequences
>g3681.t1 Gene=g3681 Length=1494
ATGGTAAATGAATATACTGGTCCCCCACCTCAAGAACTCGAAACATTTATATCAAAAGAC
CAAAAGAATGGATCTTCAACGTACAAAATTGCACCCGCAACAAATGTCGAGAAAGGAATT
TTATCGGATTATGATCCTTTCAAAGAAAGGAAAGTAGATCATCCTACGTCAGATATGGAT
ACATTGACTCATTTATTGAAAGCATCACTTGGCACTGGAATATTGGCAATGCCATTGGCA
TTTAGCTATTCTGGTTTAGTGACAGGTATTTTTGCAACTATTCTGACGGCGCTTATATGT
ACTCACTGCGCCTATATCCTTGTTAAATGCAGTCATTCATTATATTACCGCACTCGAAGG
TCAACAATGAACTTTTCTGAAGTAGCAGAAGCAGCTTGTTTAAATGGACCTGCGTGGGCA
CGTCCATGGGCACAATTTCTAAAGCATTTCATCAATTATGGTCTCTTCATTACATATTTT
GGAACATGTTCCGTATATACAGTGATTATTGCTGAAAATTTTCAACAAATTATTCAACAT
TACACTGAATGGAATGTCGATGTTCGTGTTTATATTGCAATTTTATTAATCCCATTGATT
TTATTGTCATGGGTACCAAATCTCAAGTATCTTGCACCATTCTCTTCTGTGGCTAACATA
TTCATGGGAATTGGATTATTGATAACATTTTACTATTGCGTAACAGATATGCCAAACATT
AGTGAACGTGAAATGCATACATCATTATTGCAAATCCCGCCATTCTTTGGAATAACTATA
TTTGCTATGGAGGCAATAGGAGTTGTAATGCCGCTTGAAAATTCTATGAAAACACCTAAG
CACTTCATTGGAATCTGTGGTGTATTAAATCAAGGTATGAGCGGTGTAACTTTGGTTTAT
ATTCTACTCGGTTTCGTTGGTTATGTAAAATATGGAAATGAAGCAAAAGGATCAATAACA
TTGAATTTACCTATAGAGGATTTAGCAGCACAAACTGTGAAAATTTTAATTGCATTAGCT
GTTTATTGTACATTTGGTCTTCAATTTTATGTCTGCCTTGAAATTGGATGGGATTTTATT
AAAGATAAATTTAGAAAACGTCCTTTGCTAGTTAACTACATGATGAGAACAGTTCTTGTT
ACTGCCGCTGTCTTACTTGCTGTCGCTGTGCCTACAATTGGACCTTTTGTTGGCTTACTC
GGTGCCTTCTGTTTCTCAATTCTGGGATTACTCGTGCCTGTACTTATTGAAATGATTACA
TACTGGGATGAAGGATTTGGAAAATTGAACTGGATAATTTGGAAAAATGTAATTGTTTGC
ATTTTTGGAATTCTTGCTCTTGTTTTTGGTTCAAAGGATGCAATAGCTGATATTATGAAA
ATGTATAATGAAAACCCAAGTGCTGATAATGCAACAACAATATTAGCTATCACAAATATG
AATGAAATAGTAGAAGAACTCACCACACTATTACCAACTACTACAGGTGTTTGA
>g3681.t1 Gene=g3681 Length=497
MVNEYTGPPPQELETFISKDQKNGSSTYKIAPATNVEKGILSDYDPFKERKVDHPTSDMD
TLTHLLKASLGTGILAMPLAFSYSGLVTGIFATILTALICTHCAYILVKCSHSLYYRTRR
STMNFSEVAEAACLNGPAWARPWAQFLKHFINYGLFITYFGTCSVYTVIIAENFQQIIQH
YTEWNVDVRVYIAILLIPLILLSWVPNLKYLAPFSSVANIFMGIGLLITFYYCVTDMPNI
SEREMHTSLLQIPPFFGITIFAMEAIGVVMPLENSMKTPKHFIGICGVLNQGMSGVTLVY
ILLGFVGYVKYGNEAKGSITLNLPIEDLAAQTVKILIALAVYCTFGLQFYVCLEIGWDFI
KDKFRKRPLLVNYMMRTVLVTAAVLLAVAVPTIGPFVGLLGAFCFSILGLLVPVLIEMIT
YWDEGFGKLNWIIWKNVIVCIFGILALVFGSKDAIADIMKMYNENPSADNATTILAITNM
NEIVEELTTLLPTTTGV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g3681.t1 | PANTHER | PTHR22950 | AMINO ACID TRANSPORTER | 9 | 462 | 1.5E-219 |
| 3 | g3681.t1 | PANTHER | PTHR22950:SF154 | PROTON-COUPLED AMINO ACID TRANSPORTER-LIKE PROTEIN PATHETIC | 9 | 462 | 1.5E-219 |
| 1 | g3681.t1 | Pfam | PF01490 | Transmembrane amino acid transporter protein | 56 | 452 | 1.6E-68 |
| 15 | g3681.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 64 | - |
| 26 | g3681.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 65 | 83 | - |
| 24 | g3681.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 84 | 88 | - |
| 33 | g3681.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 89 | 108 | - |
| 14 | g3681.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 109 | 149 | - |
| 32 | g3681.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 150 | 168 | - |
| 20 | g3681.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 169 | 187 | - |
| 34 | g3681.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 188 | 205 | - |
| 18 | g3681.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 206 | 211 | - |
| 25 | g3681.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 212 | 232 | - |
| 21 | g3681.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 233 | 251 | - |
| 29 | g3681.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 252 | 270 | - |
| 17 | g3681.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 271 | 281 | - |
| 35 | g3681.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 282 | 308 | - |
| 23 | g3681.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 309 | 327 | - |
| 30 | g3681.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 328 | 353 | - |
| 16 | g3681.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 354 | 372 | - |
| 28 | g3681.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 373 | 393 | - |
| 22 | g3681.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 394 | 398 | - |
| 31 | g3681.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 399 | 419 | - |
| 13 | g3681.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 420 | 430 | - |
| 27 | g3681.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 431 | 450 | - |
| 19 | g3681.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 451 | 497 | - |
| 10 | g3681.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 86 | 108 | - |
| 6 | g3681.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 149 | 171 | - |
| 4 | g3681.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 186 | 205 | - |
| 7 | g3681.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 210 | 232 | - |
| 11 | g3681.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 247 | 269 | - |
| 9 | g3681.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 282 | 304 | - |
| 8 | g3681.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 335 | 357 | - |
| 5 | g3681.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 378 | 412 | - |
| 12 | g3681.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 432 | 451 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K14209 (solute carrier family 36 (proton-coupled amino acid transporter))
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
