General information for g3681.t21
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Proton-coupled amino acid transporter-like protein pathetic.
Parent gene
- The parent gene g3681 is located on chr_3: 27393447..27394647 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3681 | g3681.t21 | TSS | g3681.t21 | 27386206 | 27386206 |
| chr_3 | g3681 | g3681.t21 | isoform | g3681.t21 | 27386243 | 27394367 |
| chr_3 | g3681 | g3681.t21 | exon | g3681.t21.exon1 | 27386243 | 27386316 |
| chr_3 | g3681 | g3681.t21 | exon | g3681.t21.exon2 | 27390260 | 27390365 |
| chr_3 | g3681 | g3681.t21 | exon | g3681.t21.exon3 | 27391844 | 27391988 |
| chr_3 | g3681 | g3681.t21 | exon | g3681.t21.exon4 | 27392559 | 27393108 |
| chr_3 | g3681 | g3681.t21 | exon | g3681.t21.exon5 | 27393228 | 27393325 |
| chr_3 | g3681 | g3681.t21 | cds | g3681.t21.CDS1 | 27393259 | 27393325 |
| chr_3 | g3681 | g3681.t21 | exon | g3681.t21.exon6 | 27393449 | 27393637 |
| chr_3 | g3681 | g3681.t21 | cds | g3681.t21.CDS2 | 27393449 | 27393637 |
| chr_3 | g3681 | g3681.t21 | exon | g3681.t21.exon7 | 27393707 | 27394367 |
| chr_3 | g3681 | g3681.t21 | cds | g3681.t21.CDS3 | 27393707 | 27394068 |
| chr_3 | g3681 | g3681.t21 | TTS | g3681.t21 | 27394504 | 27394504 |
Sequences
>g3681.t21 Gene=g3681 Length=1823
TTTATTCTGTTAATTATTTTCTCTCTTTATACCGTTTCATATCCATTTTTGTGATAAAAA
ATATAAAATAAAAAATTATTTAAAACAAATTTAATTTTCTTGAAAATAGGAATATACTGG
TCCCCCACCTCAAGAACTCGAAACATTTATATCAAAAGACCAAAAGAATGGATCTTCAAC
GTACAAAATTGCACCCGCAACAAATGTCGAGAAAGGAATTTTATCGGATTATGATCCTTT
CAAAGAAAGGAAAGTAGATCATCCTACGTCAGATATGGATACATTGACTCATTTATTGAA
AGCATCACTTGGCACTGGAATATTGGCAATGCCATTGGCATTTAGCTATTCTGGTTTAGT
GACAGGTATTTTTGCAACTATTCTGACGGCGCTTATATGTACTCACTGCGCCTATATCCT
TGTTAAATGCAGTCATTCATTATATTACCGCACTCGAAGGTCAACAATGAACTTTTCTGA
AGTAGCAGAAGCAGCTTGTTTAAATGGACCTGCGTGGGCACGTCCATGGGCACAATTTCT
AAAGCATTTCATCAATTATGGTCTCTTCATTACATATTTTGGAACATGTTCCGTATATAC
AGTGATTATTGCTGAAAATTTTCAACAAATTATTCAACATTACACTGAATGGAATGTCGA
TGTTCGTGTTTATATTGCAATTTTATTAATCCCATTGATTTTATTGTCATGGGTACCAAA
TCTCAAGTATCTTGCACCATTCTCTTCTGTGGCTAACATATTCATGGGAATTGGATTATT
GATAACATTTTACTATTGCGTAACAGATATGCCAAACATTAGTGAACGTGAAATGCATAC
ATCATTATTGCAAATCCCGCCATTCTTTGGAATAACTATATTTAAATTAAGGCAATAGGA
GTTGTAATGCCGCTTGAAAATTCTATGAAAACACCTAAGCACTTCATTGGAATCTGTGGT
GTATTAAATCAAGGTATGAGCGGTGTAACTTTGGTTTATATTCTACTCGGTTTCGTTGGT
TATGTAAAATATGGAAATGAAGCAAAAGGATCAATAACATTGAATTTACCTATAGAGGAT
TTAGCAGCACAAACTGTGAAAATTTTAATTGCATTAGCTGTTTATTGTACATTTGGTCTT
CAATTTTATGTCTGCCTTGAAATTCTTGTTACTGCCGCTGTCTTACTTGCTGTCGCTGTG
CCTACAATTGGACCTTTTGTTGGCTTACTCGGTGCCTTCTGTTTCTCAATTCTGGGATTA
CTCGTGCCTGTACTTATTGAAATGATTACATACTGGGATGAAGGATTTGGAAAATTGAAC
TGGATAATTTGGAAAAATGTAATTGTTTGCATTTTTGGAATTCTTGCTCTTGTTTTTGGT
TCAAAGGATGCAATAGCTGATATTATGAAAATGTATAATGAAAACCCAAGTGCTGATAAT
GCAACAACAATATTAGCTATCACAAATATGAATGAAATAGTAGAAGAACTCACCACACTA
TTACCAACTACTACAGGTGTTTGAAAAAAAGCAAGTCATAAACTCCGGCATCATTTAACG
TATTTGAATTTTTTTCTCAATATAAATTTTCATCATATGCAGCGAATATTCTTTAAATAA
CATATTGTAGTTAAAATTAAGATGCTGCCTAGATAGGTAGATATAGGCTTTAGTTATTTT
AAAAAACTGCTTTTACAACTATAAAATGTTCAGGTTCAGCACAGAAAGTGTTAGGTTTTT
GTGATTTTCTAAGCTGATCAAAAACAAAAGTAAAAATGAATTAAAAGACTTGTTAAATTT
TATATTTTTCTTCTTATTTTAGT
>g3681.t21 Gene=g3681 Length=205
MPLENSMKTPKHFIGICGVLNQGMSGVTLVYILLGFVGYVKYGNEAKGSITLNLPIEDLA
AQTVKILIALAVYCTFGLQFYVCLEILVTAAVLLAVAVPTIGPFVGLLGAFCFSILGLLV
PVLIEMITYWDEGFGKLNWIIWKNVIVCIFGILALVFGSKDAIADIMKMYNENPSADNAT
TILAITNMNEIVEELTTLLPTTTGV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g3681.t21 | PANTHER | PTHR22950 | AMINO ACID TRANSPORTER | 1 | 86 | 3.6E-79 |
| 4 | g3681.t21 | PANTHER | PTHR22950:SF154 | PROTON-COUPLED AMINO ACID TRANSPORTER-LIKE PROTEIN PATHETIC | 1 | 86 | 3.6E-79 |
| 3 | g3681.t21 | PANTHER | PTHR22950 | AMINO ACID TRANSPORTER | 86 | 170 | 3.6E-79 |
| 5 | g3681.t21 | PANTHER | PTHR22950:SF154 | PROTON-COUPLED AMINO ACID TRANSPORTER-LIKE PROTEIN PATHETIC | 86 | 170 | 3.6E-79 |
| 1 | g3681.t21 | Pfam | PF01490 | Transmembrane amino acid transporter protein | 2 | 87 | 6.8E-19 |
| 10 | g3681.t21 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 11 | - |
| 15 | g3681.t21 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 12 | 39 | - |
| 13 | g3681.t21 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 40 | 58 | - |
| 18 | g3681.t21 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 59 | 84 | - |
| 11 | g3681.t21 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 85 | 90 | - |
| 17 | g3681.t21 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 91 | 120 | - |
| 14 | g3681.t21 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 121 | 139 | - |
| 16 | g3681.t21 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 140 | 159 | - |
| 12 | g3681.t21 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 160 | 205 | - |
| 8 | g3681.t21 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 13 | 35 | - |
| 7 | g3681.t21 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 76 | 98 | - |
| 6 | g3681.t21 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 105 | 127 | - |
| 9 | g3681.t21 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 137 | 159 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed