General information for g3681.t24
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g3681 is located on chr_3: 27393447..27394647 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3681 | g3681.t24 | TSS | g3681.t24 | 27386206 | 27386206 |
| chr_3 | g3681 | g3681.t24 | isoform | g3681.t24 | 27386294 | 27392548 |
| chr_3 | g3681 | g3681.t24 | exon | g3681.t24.exon1 | 27386294 | 27386316 |
| chr_3 | g3681 | g3681.t24 | exon | g3681.t24.exon2 | 27390194 | 27390227 |
| chr_3 | g3681 | g3681.t24 | cds | g3681.t24.CDS1 | 27390219 | 27390227 |
| chr_3 | g3681 | g3681.t24 | exon | g3681.t24.exon3 | 27390295 | 27390365 |
| chr_3 | g3681 | g3681.t24 | cds | g3681.t24.CDS2 | 27390295 | 27390365 |
| chr_3 | g3681 | g3681.t24 | exon | g3681.t24.exon4 | 27391844 | 27392548 |
| chr_3 | g3681 | g3681.t24 | cds | g3681.t24.CDS3 | 27391844 | 27392075 |
| chr_3 | g3681 | g3681.t24 | TTS | g3681.t24 | NA | NA |
Sequences
>g3681.t24 Gene=g3681 Length=833
TGATAAAAAATATAAAATAAAAAATTAATTTAAAAAAGCAACGCTAAAATGGTAAATGAA
TATACTGGTCCCCCACCTCAAGAACTCGAAACATTTATATCAAAAGACCAAAAGAATGGA
TCTTCAACGTACAAAATTGCACCCGCAACAAATGTCGAGAAAGGAATTTTATCGGATTAT
GATCCTTTCAAAGAAAGGAAAGTAGATCATCCTACGTCAGATATGGATACATTGACTCAT
TTATTGAAAGCATCACTTGGCACTGGAATATTGGTAAAAACTAAATACAACTTTTTATCA
TATATCAAATTCATTTTCCTTTCAAATAATCATCTTTACCTCAGTCATAAAATAATATAA
AATTTTGATAATTTGTATGAATCAACCTTACAAATTAAAATTTTTCAAATTATGTTTTAT
GAAAAGCATTAGAAATTGCTAGGGTTCAAACTTGCATGCATATTTTACTTGATATGCGCA
TTTTTTTTGTCAAGTTGATTTACAAAAAAATGTCTTTAATTTTTTCAGATTGAATTCAAT
TCAATTAAAATACATAATAAATTAAAGAATGATTGACATTCATATAAATTTGCTAGATGT
CAAATGAATTAATTCAATCTGAATGAATAATAAAAGACAGTTTTGTGTACGTCAACTTGA
CAGACAAAAAAATATGCGCAAATCAAGTAAAATATACATGCAAGCCAAATCCTAAGGATT
TCACTCCTTAAAAATTTCTAAATAAAAATTTTAATTCATATTTTTGTTAAATATCTACAA
TATAAAAAGAATTTACACATTTTAAATTAATTAAAATACATTTATTTTAAAAT
>g3681.t24 Gene=g3681 Length=103
MVNEYTGPPPQELETFISKDQKNGSSTYKIAPATNVEKGILSDYDPFKERKVDHPTSDMD
TLTHLLKASLGTGILVKTKYNFLSYIKFIFLSNNHLYLSHKII
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g3681.t24 | PANTHER | PTHR22950 | AMINO ACID TRANSPORTER | 8 | 76 | 0 |
| g3681.t24 | PANTHER | PTHR22950:SF154 | PROTON-COUPLED AMINO ACID TRANSPORTER-LIKE PROTEIN PATHETIC | 8 | 76 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
