General information for g3681.t26
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Proton-coupled amino acid transporter-like protein pathetic.
Parent gene
- The parent gene g3681 is located on chr_3: 27393447..27394647 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3681 | g3681.t26 | TSS | g3681.t26 | 27386206 | 27386206 |
| chr_3 | g3681 | g3681.t26 | isoform | g3681.t26 | 27386301 | 27394647 |
| chr_3 | g3681 | g3681.t26 | exon | g3681.t26.exon1 | 27386301 | 27386316 |
| chr_3 | g3681 | g3681.t26 | exon | g3681.t26.exon2 | 27390194 | 27390227 |
| chr_3 | g3681 | g3681.t26 | exon | g3681.t26.exon3 | 27390295 | 27390365 |
| chr_3 | g3681 | g3681.t26 | exon | g3681.t26.exon4 | 27391844 | 27391988 |
| chr_3 | g3681 | g3681.t26 | exon | g3681.t26.exon5 | 27392559 | 27393108 |
| chr_3 | g3681 | g3681.t26 | exon | g3681.t26.exon6 | 27393227 | 27393325 |
| chr_3 | g3681 | g3681.t26 | cds | g3681.t26.CDS1 | 27393259 | 27393325 |
| chr_3 | g3681 | g3681.t26 | exon | g3681.t26.exon7 | 27393449 | 27394647 |
| chr_3 | g3681 | g3681.t26 | cds | g3681.t26.CDS2 | 27393449 | 27394068 |
| chr_3 | g3681 | g3681.t26 | TTS | g3681.t26 | NA | NA |
Sequences
>g3681.t26 Gene=g3681 Length=2114
AAATATAAAATAAAAAATTAATTTAAAAAAGCAACGCTAAAATGGTAAATGAATATACTG
GTCCCCCACCTCAAGAACTCGAAACATTTATATCAAAAGACCAAAAGAATGGATCTTCAA
CGTACAAAATTGCACCCGCAACAAATGTCGAGAAAGGAATTTTATCGGATTATGATCCTT
TCAAAGAAAGGAAAGTAGATCATCCTACGTCAGATATGGATACATTGACTCATTTATTGA
AAGCATCACTTGGCACTGGAATATTGGCAATGCCATTGGCATTTAGCTATTCTGGTTTAG
TGACAGGTATTTTTGCAACTATTCTGACGGCGCTTATATGTACTCACTGCGCCTATATCC
TTGTTAAATGCAGTCATTCATTATATTACCGCACTCGAAGGTCAACAATGAACTTTTCTG
AAGTAGCAGAAGCAGCTTGTTTAAATGGACCTGCGTGGGCACGTCCATGGGCACAATTTC
TAAAGCATTTCATCAATTATGGTCTCTTCATTACATATTTTGGAACATGTTCCGTATATA
CAGTGATTATTGCTGAAAATTTTCAACAAATTATTCAACATTACACTGAATGGAATGTCG
ATGTTCGTGTTTATATTGCAATTTTATTAATCCCATTGATTTTATTGTCATGGGTACCAA
ATCTCAAGTATCTTGCACCATTCTCTTCTGTGGCTAACATATTCATGGGAATTGGATTAT
TGATAACATTTTACTATTGCGTAACAGATATGCCAAACATTAGTGAACGTGAAATGCATA
CATCATTATTGCAAATCCCGCCATTCTTTGGAATAAACTATATTTAAATTAAGGCAATAG
GAGTTGTAATGCCGCTTGAAAATTCTATGAAAACACCTAAGCACTTCATTGGAATCTGTG
GTGTATTAAATCAAGGTATGAGCGGTGTAACTTTGGTTTATATTCTACTCGGTTTCGTTG
GTTATGTAAAATATGGAAATGAAGCAAAAGGATCAATAACATTGAATTTACCTATAGAGG
ATTTAGCAGCACAAACTGTGAAAATTTTAATTGCATTAGCTGTTTATTGTACATTTGGTC
TTCAATTTTATGTCTGCCTTGAAATTGGATGGGATTTTATTAAAGATAAATTTAGAAAAC
GTCCTTTGCTAGTTAACTACATGATGAGAACAGTTCTTGTTACTGCCGCTGTCTTACTTG
CTGTCGCTGTGCCTACAATTGGACCTTTTGTTGGCTTACTCGGTGCCTTCTGTTTCTCAA
TTCTGGGATTACTCGTGCCTGTACTTATTGAAATGATTACATACTGGGATGAAGGATTTG
GAAAATTGAACTGGATAATTTGGAAAAATGTAATTGTTTGCATTTTTGGAATTCTTGCTC
TTGTTTTTGGTTCAAAGGATGCAATAGCTGATATTATGAAAATGTATAATGAAAACCCAA
GTGCTGATAATGCAACAACAATATTAGCTATCACAAATATGAATGAAATAGTAGAAGAAC
TCACCACACTATTACCAACTACTACAGGTGTTTGAAAAAAAGCAAGTCATAAACTCCGGC
ATCATTTAACGTATTTGAATTTTTTTCTCAATATAAATTTTCATCATATGCAGCGAATAT
TCTTTAAATAACATATTGTAGTTAAAATTAAGATGCTGCCTAGATAGGTAGATATAGGCT
TTAGTTATTTTAAAAAACTGCTTTTACAACTATAAAATGTTCAGGTTCAGCACAGAAAGT
GTTAGGTTTTTGTGATTTTCTAAGCTGATCAAAAACAAAAGTAAAAATGAATTAAAAGAC
TTGTTAAATTTTATATTTTTCTTCTTATTTTAGTAAAATTAAAGTAGTTTATCAGTTTAT
TATTATATCAATAAATCACTTGATTTCGAAATCCCATTAAAATTTTTTGATATAACTTTT
AAAACTATCGGTTCTAACATTTGAAAGAATAAAACAAAACTTTATAGAAATGAATTAAGA
ACTGTATTTTTGTGAAATTTCAGATTCGATTTAAAACATCAAATTATCATAGTAGATTTT
TTTTATACTTGATAAATCTGTCTCTATAGTTAATACTATGGAATGAACAATTTTTTTATA
TATTTAATTCATTT
>g3681.t26 Gene=g3681 Length=228
MPLENSMKTPKHFIGICGVLNQGMSGVTLVYILLGFVGYVKYGNEAKGSITLNLPIEDLA
AQTVKILIALAVYCTFGLQFYVCLEIGWDFIKDKFRKRPLLVNYMMRTVLVTAAVLLAVA
VPTIGPFVGLLGAFCFSILGLLVPVLIEMITYWDEGFGKLNWIIWKNVIVCIFGILALVF
GSKDAIADIMKMYNENPSADNATTILAITNMNEIVEELTTLLPTTTGV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g3681.t26 | PANTHER | PTHR22950 | AMINO ACID TRANSPORTER | 1 | 193 | 5.8E-99 |
| 3 | g3681.t26 | PANTHER | PTHR22950:SF154 | PROTON-COUPLED AMINO ACID TRANSPORTER-LIKE PROTEIN PATHETIC | 1 | 193 | 5.8E-99 |
| 1 | g3681.t26 | Pfam | PF01490 | Transmembrane amino acid transporter protein | 2 | 183 | 1.9E-32 |
| 8 | g3681.t26 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 11 | - |
| 15 | g3681.t26 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 12 | 39 | - |
| 11 | g3681.t26 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 40 | 58 | - |
| 18 | g3681.t26 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 59 | 84 | - |
| 10 | g3681.t26 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 85 | 103 | - |
| 14 | g3681.t26 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 104 | 124 | - |
| 13 | g3681.t26 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 125 | 129 | - |
| 17 | g3681.t26 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 130 | 150 | - |
| 9 | g3681.t26 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 151 | 161 | - |
| 16 | g3681.t26 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 162 | 181 | - |
| 12 | g3681.t26 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 182 | 228 | - |
| 6 | g3681.t26 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 13 | 35 | - |
| 5 | g3681.t26 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 66 | 88 | - |
| 7 | g3681.t26 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 109 | 143 | - |
| 4 | g3681.t26 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 163 | 182 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
