General information for g3681.t36
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Proton-coupled amino acid transporter-like protein pathetic.
Parent gene
- The parent gene g3681 is located on chr_3: 27393447..27394647 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3681 | g3681.t36 | TSS | g3681.t36 | 27390193 | 27390193 |
| chr_3 | g3681 | g3681.t36 | isoform | g3681.t36 | 27390388 | 27394647 |
| chr_3 | g3681 | g3681.t36 | exon | g3681.t36.exon1 | 27390388 | 27391164 |
| chr_3 | g3681 | g3681.t36 | exon | g3681.t36.exon2 | 27391844 | 27391988 |
| chr_3 | g3681 | g3681.t36 | exon | g3681.t36.exon3 | 27392559 | 27393108 |
| chr_3 | g3681 | g3681.t36 | exon | g3681.t36.exon4 | 27393228 | 27393325 |
| chr_3 | g3681 | g3681.t36 | cds | g3681.t36.CDS1 | 27393259 | 27393325 |
| chr_3 | g3681 | g3681.t36 | exon | g3681.t36.exon5 | 27393449 | 27394647 |
| chr_3 | g3681 | g3681.t36 | cds | g3681.t36.CDS2 | 27393449 | 27394068 |
| chr_3 | g3681 | g3681.t36 | TTS | g3681.t36 | NA | NA |
Sequences
>g3681.t36 Gene=g3681 Length=2769
ACTAATTTATTGATAAATTTTATATACAAAATTGTATGTAATATCATGTAGAGATTAATT
TTAACAAATATTTTTCGAACTCCAATTCATTGTGGCAGTTGCGAATTATGAGACATGAAA
TTAATAAAAAACCTACCTTGCCTTATATTTCAATATTACATTTGGGAGACATTTATAATG
ATTGGAGTTGTACATTAATTTTGCCACTTGAAAAACCTTTATGAAGTGAAATCAATAATA
TTTTCATATAACACACGGAGAAAAATATTTTATAACTGGCATAAAGTTTTTTAGATTTGT
CCCTATAAAGTCAACTTTATTAGCCTTAAAAAGAAAATTTATAAGTGTTATAAATTTTTT
TATGACAGTTATAAAATATTTTTCTCCAATGCATTGGAACAGCTTGTTTTTTTTTTGAAG
AACTACCTTATATATAAATAACTTATCGATGGCAAACTTTTTCATATATTTTCGCATCAT
CATCAGAAAATTGCATTCAAGTATTGAAGAATGCATTTGTATATAAGAAGCAACATGAAA
CGAAACCATGCAATTTTTGACTTTCTCGAATTATGCTTTGTGCATATCTTTTTTGCCAAC
CCGTTGTTTTGTCCAGTCTGTATTCAGTCGTTCTTGTGATTGAAAGTATCAGAAAATTGA
TTCAAGGTTTATTTTTCAAGAAAATCGAGTAAAAGAGAAAAGCAATTATTATCAAAGATG
TCTATGCGGTTGTCTGAAATATGTTTAACTGAAAATAACAACAACGATGAGCGGTGTGTA
CAAAATTGCACCCGCAACAAATGTCGAGAAAGGAATTTTATCGGATTATGATCCTTTCAA
AGAAAGGAAAGTAGATCATCCTACGTCAGATATGGATACATTGACTCATTTATTGAAAGC
ATCACTTGGCACTGGAATATTGGCAATGCCATTGGCATTTAGCTATTCTGGTTTAGTGAC
AGGTATTTTTGCAACTATTCTGACGGCGCTTATATGTACTCACTGCGCCTATATCCTTGT
TAAATGCAGTCATTCATTATATTACCGCACTCGAAGGTCAACAATGAACTTTTCTGAAGT
AGCAGAAGCAGCTTGTTTAAATGGACCTGCGTGGGCACGTCCATGGGCACAATTTCTAAA
GCATTTCATCAATTATGGTCTCTTCATTACATATTTTGGAACATGTTCCGTATATACAGT
GATTATTGCTGAAAATTTTCAACAAATTATTCAACATTACACTGAATGGAATGTCGATGT
TCGTGTTTATATTGCAATTTTATTAATCCCATTGATTTTATTGTCATGGGTACCAAATCT
CAAGTATCTTGCACCATTCTCTTCTGTGGCTAACATATTCATGGGAATTGGATTATTGAT
AACATTTTACTATTGCGTAACAGATATGCCAAACATTAGTGAACGTGAAATGCATACATC
ATTATTGCAAATCCCGCCATTCTTTGGAATAACTATATTTAAATTAAGGCAATAGGAGTT
GTAATGCCGCTTGAAAATTCTATGAAAACACCTAAGCACTTCATTGGAATCTGTGGTGTA
TTAAATCAAGGTATGAGCGGTGTAACTTTGGTTTATATTCTACTCGGTTTCGTTGGTTAT
GTAAAATATGGAAATGAAGCAAAAGGATCAATAACATTGAATTTACCTATAGAGGATTTA
GCAGCACAAACTGTGAAAATTTTAATTGCATTAGCTGTTTATTGTACATTTGGTCTTCAA
TTTTATGTCTGCCTTGAAATTGGATGGGATTTTATTAAAGATAAATTTAGAAAACGTCCT
TTGCTAGTTAACTACATGATGAGAACAGTTCTTGTTACTGCCGCTGTCTTACTTGCTGTC
GCTGTGCCTACAATTGGACCTTTTGTTGGCTTACTCGGTGCCTTCTGTTTCTCAATTCTG
GGATTACTCGTGCCTGTACTTATTGAAATGATTACATACTGGGATGAAGGATTTGGAAAA
TTGAACTGGATAATTTGGAAAAATGTAATTGTTTGCATTTTTGGAATTCTTGCTCTTGTT
TTTGGTTCAAAGGATGCAATAGCTGATATTATGAAAATGTATAATGAAAACCCAAGTGCT
GATAATGCAACAACAATATTAGCTATCACAAATATGAATGAAATAGTAGAAGAACTCACC
ACACTATTACCAACTACTACAGGTGTTTGAAAAAAAGCAAGTCATAAACTCCGGCATCAT
TTAACGTATTTGAATTTTTTTCTCAATATAAATTTTCATCATATGCAGCGAATATTCTTT
AAATAACATATTGTAGTTAAAATTAAGATGCTGCCTAGATAGGTAGATATAGGCTTTAGT
TATTTTAAAAAACTGCTTTTACAACTATAAAATGTTCAGGTTCAGCACAGAAAGTGTTAG
GTTTTTGTGATTTTCTAAGCTGATCAAAAACAAAAGTAAAAATGAATTAAAAGACTTGTT
AAATTTTATATTTTTCTTCTTATTTTAGTAAAATTAAAGTAGTTTATCAGTTTATTATTA
TATCAATAAATCACTTGATTTCGAAATCCCATTAAAATTTTTTGATATAACTTTTAAAAC
TATCGGTTCTAACATTTGAAAGAATAAAACAAAACTTTATAGAAATGAATTAAGAACTGT
ATTTTTGTGAAATTTCAGATTCGATTTAAAACATCAAATTATCATAGTAGATTTTTTTTA
TACTTGATAAATCTGTCTCTATAGTTAATACTATGGAATGAACAATTTTTTTATATATTT
AATTCATTT
>g3681.t36 Gene=g3681 Length=228
MPLENSMKTPKHFIGICGVLNQGMSGVTLVYILLGFVGYVKYGNEAKGSITLNLPIEDLA
AQTVKILIALAVYCTFGLQFYVCLEIGWDFIKDKFRKRPLLVNYMMRTVLVTAAVLLAVA
VPTIGPFVGLLGAFCFSILGLLVPVLIEMITYWDEGFGKLNWIIWKNVIVCIFGILALVF
GSKDAIADIMKMYNENPSADNATTILAITNMNEIVEELTTLLPTTTGV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g3681.t36 | PANTHER | PTHR22950 | AMINO ACID TRANSPORTER | 1 | 193 | 5.8E-99 |
| 3 | g3681.t36 | PANTHER | PTHR22950:SF154 | PROTON-COUPLED AMINO ACID TRANSPORTER-LIKE PROTEIN PATHETIC | 1 | 193 | 5.8E-99 |
| 1 | g3681.t36 | Pfam | PF01490 | Transmembrane amino acid transporter protein | 2 | 183 | 1.9E-32 |
| 8 | g3681.t36 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 11 | - |
| 15 | g3681.t36 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 12 | 39 | - |
| 11 | g3681.t36 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 40 | 58 | - |
| 18 | g3681.t36 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 59 | 84 | - |
| 10 | g3681.t36 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 85 | 103 | - |
| 14 | g3681.t36 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 104 | 124 | - |
| 13 | g3681.t36 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 125 | 129 | - |
| 17 | g3681.t36 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 130 | 150 | - |
| 9 | g3681.t36 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 151 | 161 | - |
| 16 | g3681.t36 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 162 | 181 | - |
| 12 | g3681.t36 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 182 | 228 | - |
| 6 | g3681.t36 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 13 | 35 | - |
| 5 | g3681.t36 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 66 | 88 | - |
| 7 | g3681.t36 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 109 | 143 | - |
| 4 | g3681.t36 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 163 | 182 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
