General information for g3683.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Protein phosphatase PP2A 55 kDa regulatory subunit.
Parent gene
- The parent gene g3683 is located on chr_3: 27399253..27400730 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3683 | g3683.t6 | isoform | g3683.t6 | 27399253 | 27400730 |
| chr_3 | g3683 | g3683.t6 | exon | g3683.t6.exon1 | 27399253 | 27400730 |
| chr_3 | g3683 | g3683.t6 | cds | g3683.t6.CDS1 | 27399347 | 27399616 |
| chr_3 | g3683 | g3683.t6 | TTS | g3683.t6 | 27401196 | 27401196 |
| chr_3 | g3683 | g3683.t6 | TSS | g3683.t6 | NA | NA |
Sequences
>g3683.t6 Gene=g3683 Length=1478
TGAATATTTGCGAACGAAATTATGCTCGCTTTATGAAAACGATTGCATTTTTGATAAATT
CGAATGTTGTTGGAATGGCAATGATTCATCAATAATGACGGGCAGTTATAATAATTTCTT
CCGTGTCTTTGATCGCAATACAAAGAAGGACTTAACTATGGAGGCGTCAAAGGATATAAT
CAAACCTAAAACTGTTCTTAAGCCGCGCAAAGTATACACTGGTAACAAACGAAAAAAGGA
CGAAATTAGTGTTGATTGTTTGGATTTTAATAAAAAAATACTTCATACCGCCTGGCATCC
GCTCGAGAACATTTTAGCTGTAGCCGCTACAAACAACTTGTTTATCTTTCAAGATAAGTT
TTAGCTAAACATTTTACATCTATGTATCACAAGCTACAATTCATTATTAAATTTCGTTAT
CATCGCGATTCTTTTAATTTCATTTCTATTATCACTATTAATTTTTAGACTTTTTTGTTC
ATCGTCTTTTTTCCGTTATCTGTTCTTATTCATCGTCATTTGTGCATTAAATCGAAACTT
TTGCTATCTAAATAAATCAAAATAGAAAGAAAACACAATTTCCTAATTTATCGTCGTAAA
TACATAGTTGTAAATCAAACGAGAGAAATTAGAATCGCAGACGATAACTTCAAAAGAAAT
AAAAACAATCGCCATGGACTGTTGCATTTTATAATACCGTGAATCTATCGAAAGTAAAAG
AAAATTGTAGAAATGAATTTGTAAAAAATATAGATTCGTTTGATTGATGATCTTTAATAA
ATTATTTGTCTTGCGAAAACTATCGCCGTCACCTTTTATTCCACGTGCACACAAAACATT
TCTTTTCTTTTGCTGCTAAGCATACTACAAAGTAATAATAAAAATAAAAATACTTACAAA
TTCTTTTATATTAAAGAGATGAAGTTTATCTTCCTTTTGTTTTTCCTAATAAGAAAATTA
AAATTTTCATTTTTTGAGTTGTTGTAATTTGAAGTGAATCTAAATCTATTTTTAACGAAA
TTGCACGCGATATTTAAACACATTATGAAATCAACACAAATATTTTTTTAAAAGAACCTG
ATCAATATTAAATAAGTAATAAATTACATAAAAATCTGCTCTATGCATAACATACATAGG
ACAAAAACATATTTTTCCAAAGATTTGTCAAAATGTATACACCATATTCTTACGCCTAAA
ATTTGAAATTGATTCGCATAAATTTTGTTAATGTGAGAAAACTGCTTAGAAAAAGAGATC
AAAACTGTTGATTTCTGGGATTTTTAATGCAATTTGCCTTTATATCATTCAAAATTTTAA
AGACTGCTTAGGAAAGGCTTTTTTACAATAAATAGTTGGTAAAAATGTATGTTAAAAAAG
ACATACAGTGAAGAAAAAATAATTTTTTTGAATGACACTGAAGGAAAATTCATTTTAAGG
GAAATAAAGAGATAATATTGGAGTGCGAGATTTTGTAA
>g3683.t6 Gene=g3683 Length=89
MTGSYNNFFRVFDRNTKKDLTMEASKDIIKPKTVLKPRKVYTGNKRKKDEISVDCLDFNK
KILHTAWHPLENILAVAATNNLFIFQDKF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g3683.t6 | PANTHER | PTHR11871:SF1 | SERINE/THREONINE-PROTEIN PHOSPHATASE 2A 55 KDA REGULATORY SUBUNIT B BETA ISOFORM | 1 | 88 | 0 |
| g3683.t6 | PANTHER | PTHR11871 | PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B | 1 | 88 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0019888 | protein phosphatase regulator activity | MF |
| GO:0000159 | protein phosphatase type 2A complex | CC |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
