General information for g3686.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Abnormal cell migration protein 10.
Parent gene
- The parent gene g3686 is located on chr_3: 27416283..27422327 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3686 | g3686.t3 | isoform | g3686.t3 | 27411862 | 27413034 |
| chr_3 | g3686 | g3686.t3 | exon | g3686.t3.exon1 | 27411862 | 27412008 |
| chr_3 | g3686 | g3686.t3 | cds | g3686.t3.CDS1 | 27411864 | 27412008 |
| chr_3 | g3686 | g3686.t3 | TTS | g3686.t3 | 27411871 | 27411871 |
| chr_3 | g3686 | g3686.t3 | exon | g3686.t3.exon2 | 27412081 | 27412324 |
| chr_3 | g3686 | g3686.t3 | cds | g3686.t3.CDS2 | 27412081 | 27412324 |
| chr_3 | g3686 | g3686.t3 | exon | g3686.t3.exon3 | 27412388 | 27412544 |
| chr_3 | g3686 | g3686.t3 | cds | g3686.t3.CDS3 | 27412388 | 27412544 |
| chr_3 | g3686 | g3686.t3 | exon | g3686.t3.exon4 | 27412606 | 27413034 |
| chr_3 | g3686 | g3686.t3 | cds | g3686.t3.CDS4 | 27412606 | 27412938 |
| chr_3 | g3686 | g3686.t3 | TSS | g3686.t3 | NA | NA |
Sequences
>g3686.t3 Gene=g3686 Length=977
GGATTAGAAATATACCATCAATCTCCTGTGAAATTAAGATCAAAGGAAACGCTCTCAGTT
CCAAAAGCAGAAAGAATAAATTCATATAGATTTTCAATGGCTAATTTAGAAGAAACACAA
GAGTCAGAACTTGACTCTATTTTAACTGAACTAAGTCTTCTTGAGCAAAAAGGCGAATTG
AGACAGAGTAGACAACCAATACAAACACATAGTCGCTCAAGTTCGATTATTTCTGGTGCG
AATTCGACTATATCTACTGCCACAACTTCACATGATGTACGAGAATCATCACGTACCGAA
AGTCCTGATAATGATTCTGCATTTAGCGATACAGTTTCATTGCTTTCAAGTGAATCATCA
GCTTCAAGTGGTTTGAGTTCACTGAACAACATTAGTAAGATTCAAGTCTCACAGAACAAT
CAAGTTCAAGATACAAAATCTTCAAAAATTCAACTTGCACTTCAAAAGCTTGAGCATGCA
TCGATTAGAAGGCTCTTTGTAAAAGCATTTTCTGAAGATGGGTCCTCAAAATCATTATTA
GTCGATGAACGAATGAATTGCGGTTTCGTAACGAAATTGTTAGCAGATAAAAATCATGTC
AATATGGAAGTTAATTGGGGATTGATTGAATATTTACCAGAGCTTTATATTGAACGATTA
TTTGAAGATCACGAACAATTAGTAGAAAATTTATTACTATGGAGTAATGATAGTAAAAAT
CGCGTCTTGTTTTTAAAACGAACCGACAGAGTGTCCTTATTTACCTCACCGGAACTTTAC
CTACCGTCGTTTGAGATGACACCAGGAACTCAGCATGATGAAGAATCAAGAAATCTTCTA
TTAGAAGAATTTTTTGCCAATAACAATCAAATATCATTAGAAGGTCCACTTTATCTAAAA
AGTGAATCTAAGAAAGGCTGGAAAAAATATCATTTTGTTTTAAGGCCATCAGGTCTATAT
TATTATCCAAAGGAAAA
>g3686.t3 Gene=g3686 Length=293
MANLEETQESELDSILTELSLLEQKGELRQSRQPIQTHSRSSSIISGANSTISTATTSHD
VRESSRTESPDNDSAFSDTVSLLSSESSASSGLSSLNNISKIQVSQNNQVQDTKSSKIQL
ALQKLEHASIRRLFVKAFSEDGSSKSLLVDERMNCGFVTKLLADKNHVNMEVNWGLIEYL
PELYIERLFEDHEQLVENLLLWSNDSKNRVLFLKRTDRVSLFTSPELYLPSFEMTPGTQH
DEESRNLLLEEFFANNNQISLEGPLYLKSESKKGWKKYHFVLRPSGLYYYPKE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g3686.t3 | Coils | Coil | Coil | 5 | 25 | - |
| 6 | g3686.t3 | Gene3D | G3DSA:3.10.20.90 | - | 102 | 218 | 1.3E-35 |
| 7 | g3686.t3 | Gene3D | G3DSA:2.30.29.30 | - | 220 | 293 | 1.4E-18 |
| 10 | g3686.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 26 | 79 | - |
| 11 | g3686.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 26 | 60 | - |
| 2 | g3686.t3 | PANTHER | PTHR11243:SF23 | LD06925P | 2 | 293 | 2.4E-109 |
| 3 | g3686.t3 | PANTHER | PTHR11243 | GROWTH FACTOR RECEPTOR-BOUND PROTEIN | 2 | 293 | 2.4E-109 |
| 1 | g3686.t3 | Pfam | PF00788 | Ras association (RalGDS/AF-6) domain | 133 | 217 | 2.8E-10 |
| 12 | g3686.t3 | ProSiteProfiles | PS50200 | Ras-associating (RA) domain profile. | 127 | 218 | 20.685 |
| 13 | g3686.t3 | ProSiteProfiles | PS50003 | PH domain profile. | 258 | 293 | 8.989 |
| 9 | g3686.t3 | SMART | SM00314 | RA_5 | 129 | 218 | 8.9E-10 |
| 5 | g3686.t3 | SUPERFAMILY | SSF54236 | Ubiquitin-like | 126 | 219 | 3.25E-24 |
| 4 | g3686.t3 | SUPERFAMILY | SSF50729 | PH domain-like | 255 | 290 | 1.45E-9 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0007165 | signal transduction | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed