General information for g3696.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as TIP41-like protein.
Parent gene
- The parent gene g3696 is located on chr_3: 27491864..27495972 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3696 | g3696.t1 | TTS | g3696.t1 | 27490614 | 27490614 |
| chr_3 | g3696 | g3696.t1 | isoform | g3696.t1 | 27491102 | 27491907 |
| chr_3 | g3696 | g3696.t1 | exon | g3696.t1.exon1 | 27491102 | 27491353 |
| chr_3 | g3696 | g3696.t1 | cds | g3696.t1.CDS1 | 27491102 | 27491353 |
| chr_3 | g3696 | g3696.t1 | exon | g3696.t1.exon2 | 27491405 | 27491805 |
| chr_3 | g3696 | g3696.t1 | cds | g3696.t1.CDS2 | 27491405 | 27491805 |
| chr_3 | g3696 | g3696.t1 | exon | g3696.t1.exon3 | 27491862 | 27491907 |
| chr_3 | g3696 | g3696.t1 | cds | g3696.t1.CDS3 | 27491862 | 27491907 |
| chr_3 | g3696 | g3696.t1 | TSS | g3696.t1 | 27492175 | 27492175 |
Sequences
>g3696.t1 Gene=g3696 Length=699
ATGAATGTAAAGCTGAAGATACAGAAGGATGCTGTGAACTTTGCGTTTATCGATTTGGAT
TGGAACTTCCACATTTGCCAGATATGGTTTTTTCACAAAAACTCACTGTTGTTAGAACAT
GAAAGTGGAGCGACAATCAATTTTACACCATTGGAATCATTAAAAAGAGTTCGCAATGAG
AAATTGGACATAAGAGTAAGTTGTTCTGATGAATGGAGAGAATCGCGTCCAAAAGACAAG
ACTGAAGAGAAATTGAAACCATTTGACTGGACGTTTACAACAGATTATCAAGGAACAATC
AATGAAAAATTCATTATTGAAAAAACCGATAAGAAAATAGATAAATTTAAGCTAATGCTT
AAGGAAAATATATTATTCTATGGTGATTTGACCTTGTTTGAGGATGAACTTCATGATAAT
GGCACTTCAGTATCATCTGTCAAAATTCGTGTTATGCCATCCGGTTTTTATATTCTTCTT
CGATTTTTTTTGCGAGTTGATAATGTTCTTATTCGAATGAACGAAACAAGATATCATTGG
GAAACAGACAATGATTACATACTTAAAGAATACACCAGTAAAGAAGCAAATTACGATCAA
TTGAAACATGTTCCACCTGCCCTTTATATTTCACCCAATGAAATTTCAGAACATTTACCA
GTTAAGGAGCATATGAATGAAATTTTACGCTTTCATTAA
>g3696.t1 Gene=g3696 Length=232
MNVKLKIQKDAVNFAFIDLDWNFHICQIWFFHKNSLLLEHESGATINFTPLESLKRVRNE
KLDIRVSCSDEWRESRPKDKTEEKLKPFDWTFTTDYQGTINEKFIIEKTDKKIDKFKLML
KENILFYGDLTLFEDELHDNGTSVSSVKIRVMPSGFYILLRFFLRVDNVLIRMNETRYHW
ETDNDYILKEYTSKEANYDQLKHVPPALYISPNEISEHLPVKEHMNEILRFH
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g3696.t1 | PANTHER | PTHR21021:SF16 | TIP41-LIKE PROTEIN | 30 | 229 | 0 |
| 3 | g3696.t1 | PANTHER | PTHR21021 | GAF/PUTATIVE CYTOSKELETAL PROTEIN | 30 | 229 | 0 |
| 1 | g3696.t1 | Pfam | PF04176 | TIP41-like family | 31 | 202 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0043666 | regulation of phosphoprotein phosphatase activity | BP |
KEGG
Orthology
- This transcript has been annotated with K17607 (type 2A phosphatase activator TIP41)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
