Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3696 g3696.t5 TTS g3696.t5 27490614 27490614
chr_3 g3696 g3696.t5 isoform g3696.t5 27491501 27491907
chr_3 g3696 g3696.t5 exon g3696.t5.exon1 27491501 27491805
chr_3 g3696 g3696.t5 cds g3696.t5.CDS1 27491501 27491805
chr_3 g3696 g3696.t5 exon g3696.t5.exon2 27491862 27491907
chr_3 g3696 g3696.t5 cds g3696.t5.CDS2 27491862 27491907
chr_3 g3696 g3696.t5 TSS g3696.t5 27492175 27492175

Sequences

>g3696.t5 Gene=g3696 Length=351
ATGAATGTAAAGCTGAAGATACAGAAGGATGCTGTGAACTTTGCGTTTATCGATTTGGAT
TGGAACTTCCACATTTGCCAGATATGGTTTTTTCACAAAAACTCACTGTTGTTAGAACAT
GAAAGTGGAGCGACAATCAATTTTACACCATTGGAATCATTAAAAAGAGTTCGCAATGAG
AAATTGGACATAAGAGTAAGTTGTTCTGATGAATGGAGAGAATCGCGTCCAAAAGACAAG
ACTGAAGAGAAATTGAAACCATTTGACTGGACGTTTACAACAGATTATCAAGGAACAATC
AATGAAAAATTCATTATTGAAAAAACCGATAAGAAAATAGATAAATTTAAG

>g3696.t5 Gene=g3696 Length=117
MNVKLKIQKDAVNFAFIDLDWNFHICQIWFFHKNSLLLEHESGATINFTPLESLKRVRNE
KLDIRVSCSDEWRESRPKDKTEEKLKPFDWTFTTDYQGTINEKFIIEKTDKKIDKFK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g3696.t5 PANTHER PTHR21021:SF16 TIP41-LIKE PROTEIN 30 114 0
3 g3696.t5 PANTHER PTHR21021 GAF/PUTATIVE CYTOSKELETAL PROTEIN 30 114 0
1 g3696.t5 Pfam PF04176 TIP41-like family 31 114 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0043666 regulation of phosphoprotein phosphatase activity BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values