Gene loci information

Transcript annotation

  • This transcript has been annotated as Wolframin.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3702 g3702.t15 TTS g3702.t15 27555975 27555975
chr_3 g3702 g3702.t15 isoform g3702.t15 27556092 27558588
chr_3 g3702 g3702.t15 exon g3702.t15.exon1 27556092 27556494
chr_3 g3702 g3702.t15 cds g3702.t15.CDS1 27556092 27556494
chr_3 g3702 g3702.t15 exon g3702.t15.exon2 27556557 27558588
chr_3 g3702 g3702.t15 cds g3702.t15.CDS2 27556557 27558520
chr_3 g3702 g3702.t15 TSS g3702.t15 27558967 27558967

Sequences

>g3702.t15 Gene=g3702 Length=2435
ATCTCGATTCATCTTGTCAAGTTCAGGGAATTAATTACCTCAAAAAGGCAGCATCGCAAG
GTCATGAAATGGCGCTTGAATTATTAGGAGCATGCTATCGAACAAGACGAGGTATAAATT
CAAGTAATGAAAGTGAGATCAAAGAATTTTTGTCTCTTACACCAGCTGAGAGAACGGCTC
GACATGCAGCTCATGAACTTTTCAATAGTCTATGCAATGGAAATGAATATGTTACGGTTG
AACAATTAGAAAAACGAATGAGAGAAATTTATAAATTACAAAAGAAAAAGAAGAAACATG
ATGATGGAAGAGTATATGATAATGAAGAAATTTTAGACCAAGAGGAAATAGAAGAAGCCA
ATATTAGCAGTAGCAACAAAACGTCTTCATCGTCCTTTTATATTAGAAAACAAAGACGTT
TAAATCATGACGAAAGTCATATTTCTAAAGAAAATTTATTGGTAGCTGCTGATAATTACA
GTCATGGAGAATTGCCTCAAGTCAATAATGCATTGACACTCTCAATTCCTCATCCTCATG
CACTTCAACACGTTCCATATTTTCATCGACCATTTTTTCATCCTGCAATGTTCTTTTCAC
TGCTCTATCATCGATTCATTAAAATATTTTCATCATTTCCAAGTGATCTATTTAATAAGT
ATCAAATTCTCTTCGCATTGCTCATGTACGCATTACTTTCAACAAACACAAATCTTTTGA
TTTCACTTCCAACGGTAGTATATTACATTTCACTCTTTATCATGGTAGTTGCAAGTTTCA
AAATGCTAAAAAGCAAACATGAATTCATAGATTTTCGCATATGGTCAGGATTATTTCTTT
CATACAATGAGAATGTTTATGCCGACAATTCAGAAAATCAATTTCTTCGGAATAATTTAA
AACCTTACTTTTGGTTTTTCCTTGCATTTGCGGTAAATTTGATGATTTATCCGCTAATTT
CGGATCAATGGCTTCCAAATTCTGAAATTACTGTGGTATCATTGACATTAATGTTTCTTA
CACTTGTATGTTTCATTAATACATCATCGCATTCGGGTCTTCCTGACTTCATAACATTAA
TGTCATTTGCTGTTAATATAGTAGCAAAATATCCGGACAGTGTTGTGAGTAGCAAATGGA
GATTTTTGGATTTGAAAATTCCTGAAATTCCTAGTTTTATGATTGGTAGTGGAATAGAAT
TTTCAATGAATTGTCGTGGTATGTTGTATATCGTGATAATCATATTTATGTTAATTCTTG
CACGACGAAGAAATTGGCATGGAATTTATCAATTTTTGATTCCTCATTGCGTAACATTAG
CATGGATGCAAATTAGTTTAATCAACTCACAATCGGCAACAACTTTTGGATTAATGCGAT
CCTGTTTAGGACTAGCTGGAATTATTTTCTTTTTACCCGCATTTGGCTTAGCTACTTTGT
TTATACCAGTCTTTGCTGCAGTTGAATGGATTTCAGTTAAAGATTCAACCAACAAATTAT
TCATAACAATATCAACAAGTCTTATAGCAATATTAGGTTCTTGTTTTATGGCAATATCAC
ATCGTACTGGGAAATATGTTACATATGTTCAAATACTTTTATGTGTATGTGCATGCTTTT
TCTTATGTACACCCTACATGAAAATGAATGACGAAAATCCTTATGCTTCCTATTTACAAG
AAGCCAAAGTCATTTCAAATGTTGACATTGAAGAGACCACAATTGATTGGAAAACATTTT
ATAAATATTGCTTAGAATCTTCGGATGGAAATAAAATAAATTTGCAAATGAGATGTAGAC
ATTTAGATGGAATAAAAATTAACTGGGATGGAATTGTAAGTGATGTAGAAATATCACAAA
TACGAAACTGGAGAAAAGATTTTTTAGAAAGATTCTTACCTGATTTCATATCAAAACACA
TCATATGCTATTTTGGAGAAATAAATAAAGCAGAATGCTTCAATAATGAAAACTGTGAAA
TTAAAGAATTCATTGAAAATCAAAAGCAATGTAATCTTGATAAATGGAATATTTATGAAT
ATGCGATAACAGTAAATATTCAATCAAAAAGTTCAGGATTGCTCAATTATAATACGAAAC
AAGATTCAAAAGTTGTACTAAAAGCTCATCATATATTTGGAAATTTCACAACACGACTCA
ATTCGTCTGACAAAATTTGGTTCAAAGGAGCTTTAAAAACTTTTCCATCATCATCACATA
ATCATGAAATAAGCGATCTCTTAGCATGTAAAAATGATAAACATACTCGAATTGAAGTTA
ATTCTATTGGATGTCTTCAATGTTTAGATAAAAATCTTTTGCCTGTCACTCAAAATTCAA
TGTTTAACATAGATAATCAGCCGTTAGAAAGCCTTAGGCGAGGATTTAAGTATTTGTTAA
ATAGTTTATTTTATCCCATGATCACTTTCAAATAA

>g3702.t15 Gene=g3702 Length=788
MALELLGACYRTRRGINSSNESEIKEFLSLTPAERTARHAAHELFNSLCNGNEYVTVEQL
EKRMREIYKLQKKKKKHDDGRVYDNEEILDQEEIEEANISSSNKTSSSSFYIRKQRRLNH
DESHISKENLLVAADNYSHGELPQVNNALTLSIPHPHALQHVPYFHRPFFHPAMFFSLLY
HRFIKIFSSFPSDLFNKYQILFALLMYALLSTNTNLLISLPTVVYYISLFIMVVASFKML
KSKHEFIDFRIWSGLFLSYNENVYADNSENQFLRNNLKPYFWFFLAFAVNLMIYPLISDQ
WLPNSEITVVSLTLMFLTLVCFINTSSHSGLPDFITLMSFAVNIVAKYPDSVVSSKWRFL
DLKIPEIPSFMIGSGIEFSMNCRGMLYIVIIIFMLILARRRNWHGIYQFLIPHCVTLAWM
QISLINSQSATTFGLMRSCLGLAGIIFFLPAFGLATLFIPVFAAVEWISVKDSTNKLFIT
ISTSLIAILGSCFMAISHRTGKYVTYVQILLCVCACFFLCTPYMKMNDENPYASYLQEAK
VISNVDIEETTIDWKTFYKYCLESSDGNKINLQMRCRHLDGIKINWDGIVSDVEISQIRN
WRKDFLERFLPDFISKHIICYFGEINKAECFNNENCEIKEFIENQKQCNLDKWNIYEYAI
TVNIQSKSSGLLNYNTKQDSKVVLKAHHIFGNFTTRLNSSDKIWFKGALKTFPSSSHNHE
ISDLLACKNDKHTRIEVNSIGCLQCLDKNLLPVTQNSMFNIDNQPLESLRRGFKYLLNSL
FYPMITFK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
1 g3702.t15 PANTHER PTHR13098 WOLFRAMIN 2 788 2.8E-153
2 g3702.t15 PANTHER PTHR13098:SF3 WOLFRAMIN 2 788 2.8E-153
6 g3702.t15 PRINTS PR02060 Wolframin family signature 14 27 8.7E-86
11 g3702.t15 PRINTS PR02060 Wolframin family signature 31 49 8.7E-86
10 g3702.t15 PRINTS PR02060 Wolframin family signature 125 143 8.7E-86
14 g3702.t15 PRINTS PR02060 Wolframin family signature 156 173 8.7E-86
3 g3702.t15 PRINTS PR02060 Wolframin family signature 275 295 8.7E-86
8 g3702.t15 PRINTS PR02060 Wolframin family signature 295 315 8.7E-86
4 g3702.t15 PRINTS PR02060 Wolframin family signature 357 373 8.7E-86
5 g3702.t15 PRINTS PR02060 Wolframin family signature 403 421 8.7E-86
7 g3702.t15 PRINTS PR02060 Wolframin family signature 431 450 8.7E-86
13 g3702.t15 PRINTS PR02060 Wolframin family signature 568 588 8.7E-86
9 g3702.t15 PRINTS PR02060 Wolframin family signature 648 664 8.7E-86
12 g3702.t15 PRINTS PR02060 Wolframin family signature 684 705 8.7E-86
33 g3702.t15 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 168 -
40 g3702.t15 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 169 188 -
28 g3702.t15 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 189 199 -
35 g3702.t15 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 200 218 -
30 g3702.t15 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 219 223 -
41 g3702.t15 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 224 240 -
26 g3702.t15 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 241 279 -
38 g3702.t15 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 280 297 -
32 g3702.t15 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 298 302 -
39 g3702.t15 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 303 323 -
23 g3702.t15 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 324 329 -
45 g3702.t15 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 330 348 -
34 g3702.t15 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 349 377 -
43 g3702.t15 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 378 398 -
27 g3702.t15 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 399 404 -
44 g3702.t15 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 405 422 -
31 g3702.t15 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 423 441 -
37 g3702.t15 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 442 465 -
25 g3702.t15 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 466 476 -
42 g3702.t15 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 477 497 -
29 g3702.t15 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 498 502 -
36 g3702.t15 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 503 524 -
24 g3702.t15 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 525 788 -
22 g3702.t15 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 215 237 -
16 g3702.t15 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 280 297 -
15 g3702.t15 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 307 326 -
18 g3702.t15 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 384 401 -
21 g3702.t15 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 405 427 -
20 g3702.t15 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 440 462 -
17 g3702.t15 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 477 496 -
19 g3702.t15 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 503 525 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values