General information for g3702.t16
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Wolframin.
Parent gene
- The parent gene g3702 is located on chr_3: 27558179..27558888 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3702 | g3702.t16 | isoform | g3702.t16 | 27557073 | 27558888 |
| chr_3 | g3702 | g3702.t16 | exon | g3702.t16.exon1 | 27557073 | 27558588 |
| chr_3 | g3702 | g3702.t16 | cds | g3702.t16.CDS1 | 27557075 | 27558588 |
| chr_3 | g3702 | g3702.t16 | exon | g3702.t16.exon2 | 27558654 | 27558888 |
| chr_3 | g3702 | g3702.t16 | cds | g3702.t16.CDS2 | 27558654 | 27558726 |
| chr_3 | g3702 | g3702.t16 | TSS | g3702.t16 | 27558967 | 27558967 |
| chr_3 | g3702 | g3702.t16 | TTS | g3702.t16 | NA | NA |
Sequences
>g3702.t16 Gene=g3702 Length=1751
ATGGCTAATTGGTTAAATGGTGCAAACAATCAAGATAAATCAAAGCAACGCAAACGATGG
GAAATAGAAGACAAGAAATTGCTTAAAAACTTAAGGTGAATTAGTTATTTTCAATATTTT
TACAACAACAGTTCAACATAAATTGTAATTTTTCTTGGAAGAATGAAACTGGCAGATGAT
GGAAACAGTGATTGTCAATTTGAAGCTGCAAAAATGCTATTGGATGACACAGATGATCTC
GATTCATCTTGTCAAGTTCAGGGAATTAATTACCTCAAAAAGGCAGCATCGCAAGGTCAT
GAAATGGCGCTTGAATTATTAGGAGCATGCTATCGAACAAGACGAGGTATAAATTCAAGT
AATGAAAGTGAGATCAAAGAATTTTTGTCTCTTACACCAGCTGAGAGAACGGCTCGACAT
GCAGCTCATGAACTTTTCAATAGTCTATGCAATGGAAATGAATATGTTACGGTTGAACAA
TTAGAAAAACGAATGAGAGAAATTTATAAATTACAAAAGAAAAAGAAGAAACATGATGAT
GGAAGAGTATATGATAATGAAGAAATTTTAGACCAAGAGGAAATAGAAGAAGCCAATATT
AGCAGTAGCAACAAAACGTCTTCATCGTCCTTTTATATTAGAAAACAAAGACGTTTAAAT
CATGACGAAAGTCATATTTCTAAAGAAAATTTATTGGTAGCTGCTGATAATTACAGTCAT
GGAGAATTGCCTCAAGTCAATAATGCATTGACACTCTCAATTCCTCATCCTCATGCACTT
CAACACGTTCCATATTTTCATCGACCATTTTTTCATCCTGCAATGTTCTTTTCACTGCTC
TATCATCGATTCATTAAAATATTTTCATCATTTCCAAGTGATCTATTTAATAAGTATCAA
ATTCTCTTCGCATTGCTCATGTACGCATTACTTTCAACAAACACAAATCTTTTGATTTCA
CTTCCAACGGTAGTATATTACATTTCACTCTTTATCATGGTAGTTGCAAGTTTCAAAATG
CTAAAAAGCAAACATGAATTCATAGATTTTCGCATATGGTCAGGATTATTTCTTTCATAC
AATGAGAATGTTTATGCCGACAATTCAGAAAATCAATTTCTTCGGAATAATTTAAAACCT
TACTTTTGGTTTTTCCTTGCATTTGCGGTAAATTTGATGATTTATCCGCTAATTTCGGAT
CAATGGCTTCCAAATTCTGAAATTACTGTGGTATCATTGACATTAATGTTTCTTACACTT
GTATGTTTCATTAATACATCATCGCATTCGGGTCTTCCTGACTTCATAACATTAATGTCA
TTTGCTGTTAATATAGTAGCAAAATATCCGGACAGTGTTGTGAGTAGCAAATGGAGATTT
TTGGATTTGAAAATTCCTGAAATTCCTAGTTTTATGATTGGTAGTGGAATAGAATTTTCA
ATGAATTGTCGTGGTATGTTGTATATCGTGATAATCATATTTATGTTAATTCTTGCACGA
CGAAGAAATTGGCATGGAATTTATCAATTTTTGATTCCTCATTGCGTAACATTAGCATGG
ATGCAAATTAGTTTAATCAACTCACAATCGGCAACAACTTTTGGATTAATGCGATCCTGT
TTAGGACTAGCTGGAATTATTTTCTTTTTACCCGCATTTGGCTTAGCTACTTTGTTTATA
CCAGTCTTTGCTGCAGTTGAATGGATTTCAGTTAAAGATTCAACCAACAAATTATTCATA
ACAATATCAAC
>g3702.t16 Gene=g3702 Length=529
MKLADDGNSDCQFEAAKMLLDDTDDLDSSCQVQGINYLKKAASQGHEMALELLGACYRTR
RGINSSNESEIKEFLSLTPAERTARHAAHELFNSLCNGNEYVTVEQLEKRMREIYKLQKK
KKKHDDGRVYDNEEILDQEEIEEANISSSNKTSSSSFYIRKQRRLNHDESHISKENLLVA
ADNYSHGELPQVNNALTLSIPHPHALQHVPYFHRPFFHPAMFFSLLYHRFIKIFSSFPSD
LFNKYQILFALLMYALLSTNTNLLISLPTVVYYISLFIMVVASFKMLKSKHEFIDFRIWS
GLFLSYNENVYADNSENQFLRNNLKPYFWFFLAFAVNLMIYPLISDQWLPNSEITVVSLT
LMFLTLVCFINTSSHSGLPDFITLMSFAVNIVAKYPDSVVSSKWRFLDLKIPEIPSFMIG
SGIEFSMNCRGMLYIVIIIFMLILARRRNWHGIYQFLIPHCVTLAWMQISLINSQSATTF
GLMRSCLGLAGIIFFLPAFGLATLFIPVFAAVEWISVKDSTNKLFITIS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 19 | g3702.t16 | Gene3D | G3DSA:1.25.40.10 | - | 1 | 176 | 1.7E-8 |
| 1 | g3702.t16 | PANTHER | PTHR13098 | WOLFRAMIN | 2 | 527 | 2.0E-113 |
| 2 | g3702.t16 | PANTHER | PTHR13098:SF3 | WOLFRAMIN | 2 | 527 | 2.0E-113 |
| 9 | g3702.t16 | PRINTS | PR02060 | Wolframin family signature | 35 | 56 | 1.0E-70 |
| 11 | g3702.t16 | PRINTS | PR02060 | Wolframin family signature | 61 | 74 | 1.0E-70 |
| 6 | g3702.t16 | PRINTS | PR02060 | Wolframin family signature | 78 | 96 | 1.0E-70 |
| 4 | g3702.t16 | PRINTS | PR02060 | Wolframin family signature | 172 | 190 | 1.0E-70 |
| 3 | g3702.t16 | PRINTS | PR02060 | Wolframin family signature | 203 | 220 | 1.0E-70 |
| 10 | g3702.t16 | PRINTS | PR02060 | Wolframin family signature | 322 | 342 | 1.0E-70 |
| 8 | g3702.t16 | PRINTS | PR02060 | Wolframin family signature | 342 | 362 | 1.0E-70 |
| 7 | g3702.t16 | PRINTS | PR02060 | Wolframin family signature | 404 | 420 | 1.0E-70 |
| 5 | g3702.t16 | PRINTS | PR02060 | Wolframin family signature | 450 | 468 | 1.0E-70 |
| 12 | g3702.t16 | PRINTS | PR02060 | Wolframin family signature | 478 | 497 | 1.0E-70 |
| 26 | g3702.t16 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 215 | - |
| 33 | g3702.t16 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 216 | 235 | - |
| 21 | g3702.t16 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 236 | 246 | - |
| 37 | g3702.t16 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 247 | 265 | - |
| 27 | g3702.t16 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 266 | 270 | - |
| 32 | g3702.t16 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 271 | 287 | - |
| 24 | g3702.t16 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 288 | 326 | - |
| 34 | g3702.t16 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 327 | 344 | - |
| 29 | g3702.t16 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 345 | 349 | - |
| 38 | g3702.t16 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 350 | 370 | - |
| 20 | g3702.t16 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 371 | 376 | - |
| 31 | g3702.t16 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 377 | 395 | - |
| 28 | g3702.t16 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 396 | 424 | - |
| 35 | g3702.t16 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 425 | 445 | - |
| 23 | g3702.t16 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 446 | 451 | - |
| 30 | g3702.t16 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 452 | 472 | - |
| 25 | g3702.t16 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 473 | 491 | - |
| 36 | g3702.t16 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 492 | 515 | - |
| 22 | g3702.t16 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 516 | 529 | - |
| 17 | g3702.t16 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 262 | 284 | - |
| 14 | g3702.t16 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 327 | 344 | - |
| 18 | g3702.t16 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 356 | 378 | - |
| 16 | g3702.t16 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 423 | 445 | - |
| 15 | g3702.t16 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 450 | 472 | - |
| 13 | g3702.t16 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 487 | 509 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
