General information for g3706.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as AP-1 complex subunit beta-1.
Parent gene
- The parent gene g3706 is located on chr_3: 27565913..27568405 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3706 | g3706.t3 | isoform | g3706.t3 | 27564618 | 27566701 |
| chr_3 | g3706 | g3706.t3 | exon | g3706.t3.exon1 | 27564618 | 27564789 |
| chr_3 | g3706 | g3706.t3 | exon | g3706.t3.exon2 | 27565208 | 27565514 |
| chr_3 | g3706 | g3706.t3 | cds | g3706.t3.CDS1 | 27565236 | 27565514 |
| chr_3 | g3706 | g3706.t3 | exon | g3706.t3.exon3 | 27565913 | 27566701 |
| chr_3 | g3706 | g3706.t3 | cds | g3706.t3.CDS2 | 27565913 | 27566701 |
| chr_3 | g3706 | g3706.t3 | TSS | g3706.t3 | NA | NA |
| chr_3 | g3706 | g3706.t3 | TTS | g3706.t3 | NA | NA |
Sequences
>g3706.t3 Gene=g3706 Length=1268
ATGTTTCAATCCGTAATTTATAATTTAAATTTTTTAAAGGTTTTCTTAAAGCTATGCGGC
ACTGACAAAAAGTTTGTGTTATCGTCAGAGAAAAATTTCATTCCAATAAATTTATTAATT
TTTGTGTATTTATTGCATTTAAAACTAATTAAATCCAGTTATTGTCGTTGATAATAAGAG
CTTTTGATAGAGATCACGGAATGACTGACTCAAAGTATTTTACAACCACCAAGAAAGGTG
AAATCTTCGAGCTAAAATCAGAGCTTAATAGTGACAAAAAGGAAAAGAAAAAAGAAGCTG
TAAAGAAAGTCATTGCAAGTATGACTGTTGGCAAAGATGTTTCAGCATTATTTCCTGATG
TTGTCAACTGTATGCAAACAGATAATCTTGAACTTAAGAAGCTTGTCTATCTTTATCTCA
TGAATTATGCCAAGTCACAGCCTGACATGGCAATTATGGCTGTCAATACTTTCGTTAAGG
ATTGCGAAGATTCAAATCCGTTGATAAGAGCGTTGGCTGTCAGAACAATGGGATGTATTC
GTGTCGATAAAATTACTGAATATTTATGTGAACCATTGAGAAAGTGTTTAAAAGATGAAG
ATCCGTATGTTCGTAAAACTGCCGCTGTATGTGTTGCTAAATTATATGATATTTCAAGCT
CGATGGTTGAAGATCAAGGCTTTTTGGATCAATTGAAAGATTTACTGTCAGATTCAAATC
CAATGGTTGTTGCAAATGCTGTTGCTGCTTTAAGTGAGATTAATGAATCGTCAGCATCTG
GTCAACCACTTGTTGAATTGAATTCAGCAACAATTAATAAGCTTCTTACTGCTCTCAATG
AATGTACTGAATGGGGTCAAGTTTTTATTCTCGATTCATTAGCAAATTATACACCAAAAG
ATGAACGTGAAGCACAATCAATTTGTGAAAGAATTACACCACGTCTTGCTCATGCAAATG
CTGCTGTTGTCTTAAGTGCAATCAAAGTGTTGATGAAGTTGCTCGAAATTTTATCATCTG
ATAGTGATTTCTGTGCTACATTGACTAAAAAGCTTGCACCACCACTTGTTACTCTTCTTT
CATCCGAAGCAGAGGTACAATATGTAGCATTGAGAAATATCAATTTGATTGTTCAAAAAC
GTCCTGATATTTTGAAACATGAGATGAAAGTTTTCTTCGTCAAATATAATGATCCAATTT
ATGTGAAACTCGAGAAATTGGATATCATGATTCGTTTGGCAAATCAAAGTAATATTGCAC
AAGTTTTG
>g3706.t3 Gene=g3706 Length=356
MTDSKYFTTTKKGEIFELKSELNSDKKEKKKEAVKKVIASMTVGKDVSALFPDVVNCMQT
DNLELKKLVYLYLMNYAKSQPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCIRVDKITE
YLCEPLRKCLKDEDPYVRKTAAVCVAKLYDISSSMVEDQGFLDQLKDLLSDSNPMVVANA
VAALSEINESSASGQPLVELNSATINKLLTALNECTEWGQVFILDSLANYTPKDEREAQS
ICERITPRLAHANAAVVLSAIKVLMKLLEILSSDSDFCATLTKKLAPPLVTLLSSEAEVQ
YVALRNINLIVQKRPDILKHEMKVFFVKYNDPIYVKLEKLDIMIRLANQSNIAQVL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g3706.t3 | Gene3D | G3DSA:1.25.10.10 | - | 1 | 356 | 0 |
| 2 | g3706.t3 | PANTHER | PTHR11134:SF31 | AP-1 COMPLEX SUBUNIT BETA-1 | 1 | 356 | 0 |
| 3 | g3706.t3 | PANTHER | PTHR11134 | ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBER | 1 | 356 | 0 |
| 1 | g3706.t3 | Pfam | PF01602 | Adaptin N terminal region | 15 | 356 | 0 |
| 4 | g3706.t3 | SUPERFAMILY | SSF48371 | ARM repeat | 6 | 356 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006886 | intracellular protein transport | BP |
| GO:0030117 | membrane coat | CC |
| GO:0016192 | vesicle-mediated transport | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
