General information for g3707.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Serine/threonine-protein phosphatase 5.
Parent gene
- The parent gene g3707 is located on chr_3: 27570043..27570764 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3707 | g3707.t4 | TSS | g3707.t4 | 27568731 | 27568731 |
| chr_3 | g3707 | g3707.t4 | isoform | g3707.t4 | 27568802 | 27570764 |
| chr_3 | g3707 | g3707.t4 | exon | g3707.t4.exon1 | 27568802 | 27568892 |
| chr_3 | g3707 | g3707.t4 | exon | g3707.t4.exon2 | 27569257 | 27569626 |
| chr_3 | g3707 | g3707.t4 | exon | g3707.t4.exon3 | 27569740 | 27569874 |
| chr_3 | g3707 | g3707.t4 | exon | g3707.t4.exon4 | 27569940 | 27570425 |
| chr_3 | g3707 | g3707.t4 | cds | g3707.t4.CDS1 | 27570101 | 27570425 |
| chr_3 | g3707 | g3707.t4 | exon | g3707.t4.exon5 | 27570487 | 27570764 |
| chr_3 | g3707 | g3707.t4 | cds | g3707.t4.CDS2 | 27570487 | 27570764 |
| chr_3 | g3707 | g3707.t4 | TTS | g3707.t4 | 27570813 | 27570813 |
Sequences
>g3707.t4 Gene=g3707 Length=1360
ATGGCAACTGAAGTCAAAAATGGAAGTCCAACTGCAGAGCAGATAGCAGAGGCTGATAAA
TATAAAGAACAAGCTAATGAATACTTCAAAAATAAAATATATGATAAGGCTATCGAGTTA
TATTCAAAGGCAATTGAGTTAGACCCAAATAATGCAGTTTATTATGCAAACAGATCACTT
GCAAATCTTCGAACAGAATTATTTGGATATGCACTTAACGATGCTGTTAAGGCTGTAAAG
GCTGATCCAGGATACTTAAAAGGATATTATCGTCGAGCGGCAGCACATATGTCTTTAGGA
AAATTCAAACTCGCACTTGCTGACTTTGAGATTGTAAGTAAGAGAAGACCAAACGATTCC
GATGCTAAAAAGAAATTCGTAGAGTGCAATAAGATTGTAAAAAAGATTGCATTCGAGAGA
GCGATTGCTGTTGATAGACCAGAAAAAACTCTGGCTGAAATATCAAAAGAAATTACACAA
GAAGTTTGCTTATAAAATTCTTTACGACATTGATTCCTATCTAAGGAAACAGCCTTCACT
CGTTGATATTTCAATTCCTGATGAAGGAAAATTTACGATTTGTGGAGATATTCATGGGCA
ATTTTATGATCTATTAAACATTTTTGAAAAAAATGGTCTTCCTTCCGAAACAAATCCTTA
TTTATTCAATGGTGATTTTGTTGATCGTGGTTCGTTTAGTGTTGAATGTATTTTTACACT
ATTTGGTTTTAAACTGCTATATCCAAATCATTTTTATATGAGCCGAGGAAATCATGAATC
AGTAAATATGAATCAAATGTATGGCTTTACTGGTGAAGTAACAGCAAAATATAATAGCAC
TATGGCTGATATGTTCACGCAAGTTTTTAATTTCTTGCCACTATCACATGTGCTCAATAA
TAAAGTGCTTGTATGTCACGGTGGCCTCTTTTCAAGTGATGATGTTATGCTCGATGATTT
ACGTAAAATTGAAAGAAATAGGCAACCTCCAGAGGAAGGTTTAATGTGTGAATTACTATG
GTCAGATCCACAAGCTCAAAATGGTAGAGCTCCTTCAAAACGAGGTGTTGGTTGTCAGTT
TGGTCCTGATGTGACTGAAAATTTCTTAAAGAAAAATAATTTGGAGTATGTTGTAAGAAG
CCATGAAGTAAAAGACATGGGTTACGAAATTGCTCATGATGGAAAATGCATTACAGTATT
TTCTGCACCAAATTATTGTGACACTATGGGAAATAAAGGTGCATATATAAATTTAAAAGG
AAAAGACATGAAACCATCATTTGAAGTGTTTGATGCAGTTCCACATCCAAACGTTAAACC
AATGATGTATGCTAATTCATTAATGAACTTGATAATGTAG
>g3707.t4 Gene=g3707 Length=200
MSRGNHESVNMNQMYGFTGEVTAKYNSTMADMFTQVFNFLPLSHVLNNKVLVCHGGLFSS
DDVMLDDLRKIERNRQPPEEGLMCELLWSDPQAQNGRAPSKRGVGCQFGPDVTENFLKKN
NLEYVVRSHEVKDMGYEIAHDGKCITVFSAPNYCDTMGNKGAYINLKGKDMKPSFEVFDA
VPHPNVKPMMYANSLMNLIM
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 11 | g3707.t4 | Gene3D | G3DSA:3.60.21.10 | - | 1 | 199 | 0 |
| 2 | g3707.t4 | PANTHER | PTHR45668 | SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED | 1 | 198 | 0 |
| 3 | g3707.t4 | PANTHER | PTHR45668:SF5 | SERINE/THREONINE-PROTEIN PHOSPHATASE 5 | 1 | 198 | 0 |
| 8 | g3707.t4 | PRINTS | PR00114 | Serine/threonine phosphatase family signature | 1 | 25 | 0 |
| 7 | g3707.t4 | PRINTS | PR00114 | Serine/threonine phosphatase family signature | 35 | 61 | 0 |
| 4 | g3707.t4 | PRINTS | PR00114 | Serine/threonine phosphatase family signature | 65 | 92 | 0 |
| 6 | g3707.t4 | PRINTS | PR00114 | Serine/threonine phosphatase family signature | 121 | 141 | 0 |
| 5 | g3707.t4 | PRINTS | PR00114 | Serine/threonine phosphatase family signature | 143 | 159 | 0 |
| 1 | g3707.t4 | Pfam | PF00149 | Calcineurin-like phosphoesterase | 1 | 132 | 0 |
| 10 | g3707.t4 | SMART | SM00156 | pp2a_7 | 1 | 182 | 0 |
| 9 | g3707.t4 | SUPERFAMILY | SSF56300 | Metallo-dependent phosphatases | 3 | 195 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016787 | hydrolase activity | MF |
| GO:0004721 | phosphoprotein phosphatase activity | MF |
| GO:0006470 | protein dephosphorylation | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed