Gene loci information

Transcript annotation

  • This transcript has been annotated as Serine/threonine-protein phosphatase 5.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3707 g3707.t6 TSS g3707.t6 27568731 27568731
chr_3 g3707 g3707.t6 isoform g3707.t6 27568802 27570764
chr_3 g3707 g3707.t6 exon g3707.t6.exon1 27568802 27569874
chr_3 g3707 g3707.t6 cds g3707.t6.CDS1 27569454 27569874
chr_3 g3707 g3707.t6 exon g3707.t6.exon2 27569940 27570425
chr_3 g3707 g3707.t6 cds g3707.t6.CDS2 27569940 27570425
chr_3 g3707 g3707.t6 exon g3707.t6.exon3 27570487 27570764
chr_3 g3707 g3707.t6 cds g3707.t6.CDS3 27570487 27570764
chr_3 g3707 g3707.t6 TTS g3707.t6 27570813 27570813

Sequences

>g3707.t6 Gene=g3707 Length=1837
ATGGCAACTGAAGTCAAAAATGGAAGTCCAACTGCAGAGCAGATAGCAGAGGCTGATAAA
TATAAAGAACAAGCTAATGAATACTTCAAAAGTAATTTTCTATTAAAAAATCATTAACCT
TAGTGTATTTGAAAAATATTTTCTCTTTGACATGGTTTTATACAAAAACAATAGAAATTA
ATTTAGTGATGGTATAATAATCTTAACATGTGTAAATCAATAGAAGTTGCATTAAATAAG
TTATATAGTTCAAATAAAAAAACATTGAAATACTTTTCCGGATGTTTCTTTTTCTCTTGA
GAATGAATAAATTTAATGTACTTGATTTTATAGAGCCTAAAAAAATAAGCAATGAACTAT
ATAAAGTATCAAAACATAAATCCATGTTTAAAAGAATCAAATATAACTCATTATAATTTG
ACAGCGATTGATTTTATGAAATTATTTTCTTTTAGATAAAATATATGATAAGGCTATCGA
GTTATATTCAAAGGCAATTGAGTTAGACCCAAATAATGCAGTTTATTATGCAAACAGATC
ACTTGCAAATCTTCGAACAGAATTATTTGGATATGCACTTAACGATGCTGTTAAGGCTGT
AAAGGCTGATCCAGGATACTTAAAAGGATATTATCGTCGAGCGGCAGCACATATGTCTTT
AGGAAAATTCAAACTCGCACTTGCTGACTTTGAGATTGTAAGTAAGAGAAGACCAAACGA
TTCCGATGCTAAAAAGAAATTCGTAGAGTGCAATAAGATTGTAAAAAAGATTGCATTCGA
GAGAGCGATTGCTGTTGATAGACCAGAAAAAACTCTGGCTGAAATGTATCAAAGTTTAGA
CTCGATCTCAATTGAAGATGATTATAATGGACCAAAATTAAAAGACGACGAAACAGTTAC
CATAGAATTTATGAAAGAGCTAATGCAATGGTACAAAGATCAAAAGAAATTACACAAGAA
GTTTGCTTATAAAATTCTTTACGACATTGATTCCTATCTAAGGAAACAGCCTTCACTCGT
TGATATTTCAATTCCTGATGAAGGAAAATTTACGATTTGTGGAGATATTCATGGGCAATT
TTATGATCTATTAAACATTTTTGAAAAAAATGGTCTTCCTTCCGAAACAAATCCTTATTT
ATTCAATGGTGATTTTGTTGATCGTGGTTCGTTTAGTGTTGAATGTATTTTTACACTATT
TGGTTTTAAACTGCTATATCCAAATCATTTTTATATGAGCCGAGGAAATCATGAATCAGT
AAATATGAATCAAATGTATGGCTTTACTGGTGAAGTAACAGCAAAATATAATAGCACTAT
GGCTGATATGTTCACGCAAGTTTTTAATTTCTTGCCACTATCACATGTGCTCAATAATAA
AGTGCTTGTATGTCACGGTGGCCTCTTTTCAAGTGATGATGTTATGCTCGATGATTTACG
TAAAATTGAAAGAAATAGGCAACCTCCAGAGGAAGGTTTAATGTGTGAATTACTATGGTC
AGATCCACAAGCTCAAAATGGTAGAGCTCCTTCAAAACGAGGTGTTGGTTGTCAGTTTGG
TCCTGATGTGACTGAAAATTTCTTAAAGAAAAATAATTTGGAGTATGTTGTAAGAAGCCA
TGAAGTAAAAGACATGGGTTACGAAATTGCTCATGATGGAAAATGCATTACAGTATTTTC
TGCACCAAATTATTGTGACACTATGGGAAATAAAGGTGCATATATAAATTTAAAAGGAAA
AGACATGAAACCATCATTTGAAGTGTTTGATGCAGTTCCACATCCAAACGTTAAACCAAT
GATGTATGCTAATTCATTAATGAACTTGATAATGTAG

>g3707.t6 Gene=g3707 Length=394
MSLGKFKLALADFEIVSKRRPNDSDAKKKFVECNKIVKKIAFERAIAVDRPEKTLAEMYQ
SLDSISIEDDYNGPKLKDDETVTIEFMKELMQWYKDQKKLHKKFAYKILYDIDSYLRKQP
SLVDISIPDEGKFTICGDIHGQFYDLLNIFEKNGLPSETNPYLFNGDFVDRGSFSVECIF
TLFGFKLLYPNHFYMSRGNHESVNMNQMYGFTGEVTAKYNSTMADMFTQVFNFLPLSHVL
NNKVLVCHGGLFSSDDVMLDDLRKIERNRQPPEEGLMCELLWSDPQAQNGRAPSKRGVGC
QFGPDVTENFLKKNNLEYVVRSHEVKDMGYEIAHDGKCITVFSAPNYCDTMGNKGAYINL
KGKDMKPSFEVFDAVPHPNVKPMMYANSLMNLIM

Protein features from InterProScan

Transcript Database ID Name Start End E.value
16 g3707.t6 CDD cd07417 MPP_PP5_C 71 387 0
13 g3707.t6 Gene3D G3DSA:1.25.40.10 - 1 73 0
14 g3707.t6 Gene3D G3DSA:3.60.21.10 - 74 394 0
3 g3707.t6 PANTHER PTHR45668 SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED 1 392 0
4 g3707.t6 PANTHER PTHR45668:SF5 SERINE/THREONINE-PROTEIN PHOSPHATASE 5 1 392 0
15 g3707.t6 PIRSF PIRSF033096 PPPtase_5 1 394 0
7 g3707.t6 PRINTS PR00114 Serine/threonine phosphatase family signature 132 159 0
5 g3707.t6 PRINTS PR00114 Serine/threonine phosphatase family signature 162 189 0
8 g3707.t6 PRINTS PR00114 Serine/threonine phosphatase family signature 195 219 0
6 g3707.t6 PRINTS PR00114 Serine/threonine phosphatase family signature 229 255 0
9 g3707.t6 PRINTS PR00114 Serine/threonine phosphatase family signature 259 286 0
10 g3707.t6 PRINTS PR00114 Serine/threonine phosphatase family signature 315 335 0
11 g3707.t6 PRINTS PR00114 Serine/threonine phosphatase family signature 337 353 0
1 g3707.t6 Pfam PF08321 PPP5 TPR repeat region 32 124 0
2 g3707.t6 Pfam PF00149 Calcineurin-like phosphoesterase 132 326 0
17 g3707.t6 SMART SM00156 pp2a_7 100 376 0
12 g3707.t6 SUPERFAMILY SSF56300 Metallo-dependent phosphatases 66 389 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016787 hydrolase activity MF
GO:0005515 protein binding MF
GO:0004721 phosphoprotein phosphatase activity MF
GO:0006470 protein dephosphorylation BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values