Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Tyrosine-protein kinase Fer.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3711 g3711.t4 TTS g3711.t4 27578150 27578150
chr_3 g3711 g3711.t4 isoform g3711.t4 27578866 27579659
chr_3 g3711 g3711.t4 exon g3711.t4.exon1 27578866 27579400
chr_3 g3711 g3711.t4 cds g3711.t4.CDS1 27578867 27579151
chr_3 g3711 g3711.t4 exon g3711.t4.exon2 27579462 27579659
chr_3 g3711 g3711.t4 TSS g3711.t4 NA NA

Sequences

>g3711.t4 Gene=g3711 Length=733
CTTACAGTTTCACCGACTCAGCCCTTATATCTTGAACCATGGTTTCATGGTGTGCTACCA
AGAGAAGAAGTTGTACGATTATTACGAAATGAAGGTGATTTTTTGGTACGCGAAACAACT
AGAAACGATGAAACTCAAATTGTATTGAGTGTCTGTTGGAATGGACATAAACATTTTATT
GTGCAAACGACTGCTGATAACCATTATCGATTTGAAGGTCCATCATTTGCGAATATTCAA
GAATTAATTCTTCATCAGTATCAATCGGGTCTTGTAGTGACTAATCGTTCAGGTGCAATA
CTTAAAAACGCAATTTTTAGGGAAAAATGGGAACTATCAAATGATGATGTGCTTTTGGTT
GAGAAAATCGGCAGAGGAAATTTTGGTGATGTTTATAAAGCAAAGCTTAAAAATACGAAA
CAGGAAGTTGCGGTTAAAACTTGTAAAATGACATTACCTGAAGAACAAAAAAAGAAGTTT
TTGCAAGAAGGAAGAATATTAAAGCAATATGATCATCCAAATATTGTAAAATTGATAGGC
ATTTGTGTACAAAAACAACCAATTATGATTGTTATGGAATTGGTAGAAGGAGGAAGTCTT
TTGATGTTTCTTCGGAAAAATGCACAAATATTAGAATTAAAACAGATGCTACGAATGTGC
AGTGACATTTCTGCTGGCATGCAATATTTAGAATCAAAAAATTGCATTCATCGAGATTTA
GCTGCTAGAAATT

>g3711.t4 Gene=g3711 Length=95
MTLPEEQKKKFLQEGRILKQYDHPNIVKLIGICVQKQPIMIVMELVEGGSLLMFLRKNAQ
ILELKQMLRMCSDISAGMQYLESKNCIHRDLAARN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g3711.t4 Gene3D G3DSA:1.10.510.10 Transferase(Phosphotransferase) domain 1 2 95 0.0000000
2 g3711.t4 PANTHER PTHR24418:SF418 TYROSINE-PROTEIN KINASE FER 1 95 0.0000000
3 g3711.t4 PANTHER PTHR24418 TYROSINE-PROTEIN KINASE 1 95 0.0000000
5 g3711.t4 PRINTS PR00109 Tyrosine kinase catalytic domain signature 43 56 0.0000000
4 g3711.t4 PRINTS PR00109 Tyrosine kinase catalytic domain signature 80 95 0.0000000
1 g3711.t4 Pfam PF07714 Protein tyrosine and serine/threonine kinase 5 95 0.0000000
9 g3711.t4 ProSiteProfiles PS50011 Protein kinase domain profile. 1 95 18.3230000
7 g3711.t4 SMART SM00219 tyrkin_6 2 95 0.0000041
6 g3711.t4 SUPERFAMILY SSF56112 Protein kinase-like (PK-like) 5 95 0.0000000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004713 protein tyrosine kinase activity MF
GO:0005524 ATP binding MF
GO:0004672 protein kinase activity MF
GO:0006468 protein phosphorylation BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed