General information for g3711.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Tyrosine-protein kinase Fer.
Parent gene
- The parent gene g3711 is located on chr_3: 27583486..27584122 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3711 | g3711.t6 | isoform | g3711.t6 | 27580516 | 27583675 |
| chr_3 | g3711 | g3711.t6 | exon | g3711.t6.exon1 | 27580516 | 27580929 |
| chr_3 | g3711 | g3711.t6 | exon | g3711.t6.exon2 | 27580996 | 27581179 |
| chr_3 | g3711 | g3711.t6 | cds | g3711.t6.CDS1 | 27581164 | 27581179 |
| chr_3 | g3711 | g3711.t6 | exon | g3711.t6.exon3 | 27581263 | 27581342 |
| chr_3 | g3711 | g3711.t6 | cds | g3711.t6.CDS2 | 27581263 | 27581342 |
| chr_3 | g3711 | g3711.t6 | exon | g3711.t6.exon4 | 27581458 | 27581648 |
| chr_3 | g3711 | g3711.t6 | cds | g3711.t6.CDS3 | 27581458 | 27581648 |
| chr_3 | g3711 | g3711.t6 | exon | g3711.t6.exon5 | 27583486 | 27583675 |
| chr_3 | g3711 | g3711.t6 | cds | g3711.t6.CDS4 | 27583486 | 27583675 |
| chr_3 | g3711 | g3711.t6 | TSS | g3711.t6 | 27584122 | 27584122 |
| chr_3 | g3711 | g3711.t6 | TTS | g3711.t6 | NA | NA |
Sequences
>g3711.t6 Gene=g3711 Length=1059
ATGGGACTCTCAACACAGGGAAAGAACATTCACGATGTAATAACTGCACGACATGAGTCC
GAAATTCGTCTCATCGAAGTTATGCGTAAATGTTTATTACTAAAAGTAAAGTGCGATCGT
GATTATGCGTCTTCAATCCAGAGTGTTTCCGTCGTTGGTCTCAAAATTGATCGAATAGAC
GATCTAAATGGAAGTCAAATTTTCAAAACATGGAAGCGATTTATGGAAGAATTAGAAAAT
CAATCTAAGTTGATTCGCAAGAAAATGGAATGTTTAGAGAACATTTGCATCGATCGAATA
TCAAATATTTTAGTTGAAAAAAGAAAAATAAAGAAGCAATGTCAAGACGATCATGAAAAA
ATTGCGTCAAGACTATTCCAGTTTACCGATGAAGTTGCAAAAAAGAAGACTGAGTACAAT
AAGCAACTAGAATATTACAAACAAATGAGATTACGCTTCGAGTCGGAAGTTAGATGATGT
GAGAGAAAAGTACCAAAAGGCATGTAGAAAATTGCATTTGATTCACAATGAATATGTATT
ACTGTTACACGAAGCGACTGAAGTTGAAAAAGATTATAGAACCGACCTCTTTCCTACTTT
CTTATCAAATCAAGAAGCTCTCCATGAACAATTTAATGAAAATTGGAATAGTATATTAGT
AGATATTGCAAAACTACTCGATCTATCATCAGCTGATGAATTTTTGAAAACACAAGAACA
ATTAAGTAATGGTTTGAAGGGTTCAATATCAAAAGATGAGTATAATGACATATTGGAAAA
ATATAAAGCATCACCGATAGTCTTTCATTTTGATGAAAACTTAATAAATGACAATGTTGG
AAAATTATTGCCTAATCAATTAGCTGTAGATAACTTAACAATCGATTGGCTAAAACAAAA
AATGCTAGAGCTTGAACAATCAATGAAAGAATGCCAAGAAGAACAGCAAAAGCTCAAGCA
AAGCAATAGCAGTGAACAGTTGACACTAAATAATTTACTCAACAAGAGTCTTGTGAATAT
TGAAGGTCAAAATCATAGTTCTCAAATAGTTGATTTAAA
>g3711.t6 Gene=g3711 Length=158
MGLSTQGKNIHDVITARHESEIRLIEVMRKCLLLKVKCDRDYASSIQSVSVVGLKIDRID
DLNGSQIFKTWKRFMEELENQSKLIRKKMECLENICIDRISNILVEKRKIKKQCQDDHEK
IASRLFQFTDEVAKKKTEYNKQLEYYKQMRLRFESEVR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g3711.t6 | Coils | Coil | Coil | 75 | 95 | - |
| 4 | g3711.t6 | Gene3D | G3DSA:1.20.1270.60 | Arfaptin | 2 | 158 | 7.5E-21 |
| 1 | g3711.t6 | Pfam | PF00611 | Fes/CIP4, and EFC/F-BAR homology domain | 12 | 84 | 2.2E-6 |
| 6 | g3711.t6 | ProSiteProfiles | PS51741 | F-BAR domain profile. | 1 | 158 | 12.959 |
| 3 | g3711.t6 | SMART | SM00055 | fch_2 | 1 | 92 | 0.0083 |
| 2 | g3711.t6 | SUPERFAMILY | SSF103657 | BAR/IMD domain-like | 11 | 154 | 3.77E-12 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
