General information for g3715.t13
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Fatty acyl-CoA reductase wat.
Parent gene
- The parent gene g3715 is located on chr_3: 27608867..27612319 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3715 | g3715.t13 | TTS | g3715.t13 | 27605604 | 27605604 |
| chr_3 | g3715 | g3715.t13 | isoform | g3715.t13 | 27606327 | 27612319 |
| chr_3 | g3715 | g3715.t13 | exon | g3715.t13.exon1 | 27606327 | 27606689 |
| chr_3 | g3715 | g3715.t13 | cds | g3715.t13.CDS1 | 27606328 | 27606689 |
| chr_3 | g3715 | g3715.t13 | exon | g3715.t13.exon2 | 27606754 | 27606929 |
| chr_3 | g3715 | g3715.t13 | cds | g3715.t13.CDS2 | 27606754 | 27606929 |
| chr_3 | g3715 | g3715.t13 | exon | g3715.t13.exon3 | 27606997 | 27607127 |
| chr_3 | g3715 | g3715.t13 | cds | g3715.t13.CDS3 | 27606997 | 27607127 |
| chr_3 | g3715 | g3715.t13 | exon | g3715.t13.exon4 | 27607757 | 27608005 |
| chr_3 | g3715 | g3715.t13 | cds | g3715.t13.CDS4 | 27607757 | 27608005 |
| chr_3 | g3715 | g3715.t13 | exon | g3715.t13.exon5 | 27608109 | 27608221 |
| chr_3 | g3715 | g3715.t13 | cds | g3715.t13.CDS5 | 27608109 | 27608132 |
| chr_3 | g3715 | g3715.t13 | exon | g3715.t13.exon6 | 27609453 | 27609510 |
| chr_3 | g3715 | g3715.t13 | exon | g3715.t13.exon7 | 27609598 | 27609679 |
| chr_3 | g3715 | g3715.t13 | exon | g3715.t13.exon8 | 27612210 | 27612319 |
| chr_3 | g3715 | g3715.t13 | TSS | g3715.t13 | 27612316 | 27612316 |
Sequences
>g3715.t13 Gene=g3715 Length=1282
TTTAGTTAGATTTTGGTCGTTGTGTCAATCATACGTGCTGACGAGTTAAAAAATAAATAA
ATATAGCGCTTGAGTTGAATATAAAGAATTGCTTAAAGAAGAAAAAAAGAACTTAAATTT
ATAACATAAATAAATAAAGAAAATGGCTCCCTTGCAAGAAACAATCGAAGAATACAATGA
ATTGCAGCGTGACAATTCTACAAGAATAAAAACATCTTCATTACCGGAGCGACAGGTTTT
CTCGGAAAAGTTTTAATTGAGAAACTCTTAAGAGCCTGTGACGTTGAGAGGATTTTTATA
TTGATTCGAAGTAAGAAAAATGACGATATTAACACACGTATGGAAAAAATATTTGAAGAT
CAATTATTTGATCAAGTGAGAAAAAACAATCCAACTTATCGACAAAAAATTTATCCAATC
AATGGCGACTGCATTTTGCCTGGCTTGGGCATCAGTCTAAGTGACCGTGCACTGCTCATC
AAACACTGCAATATTGTCTTTCATGGTGCAGCTACAGTTAGATTTGATGAGAAACTGAAA
CTTGCTCTTGCAATCAATGTTTGCGGTACAAGAGAAATTATGAATTTAGCTAAAGAAATG
GAAAATCTTCAGTCAACTGCATATGCAAATTGTCCACATCCTGAAATTGAAGAAAAATTT
TATTCAACACCAATCAGCGGAGAGAATGGTACATATTTGGCTGAAATGTTAGATGAAGAA
ACATTAGAAAAAATGACACCAGCACTCTTGAGAGACTGGCCCAATACATATACATATACA
AAGTCATTGGCAGAAGATTATGTTAGAGCACATTCTAAAAATTTACCAGTTGCTGTATTT
CGTCCTGCAATTGTAATACCAACATTTAGAGAACCACTTAGAGGTTGGATCGATAACATG
TATGGCCCAACTGGAATTGTTATTGGAGTTGCTGCCGGACTTTTGAGAGTTTTACACATA
AACAAAGAGAACAGAGCTGAGCTTGTACCCGTTGATATGTCTGTAAATTCGCTCATTGCC
TGTGCTTATGATGTCGGTATAAATAATCATTATGATGAGCCACCAATCTACAATTATGTT
ACAAGCAAAAAAAATTCTATTTCATGGCAAGATTATTGCGATTATAGCATTTTAAATGGA
GTAACCGCACCATTATCGAAAATGGCTTGGTACTTTACATTTACAATGGTCTCATCTAAA
AATCTTGCTATATTATTGACCTTCCTCTATCATACATTACCGGCTGCAATTATTGATGGT
GTTCTTGTATTGTGTGGAAAAA
>g3715.t13 Gene=g3715 Length=314
MEKIFEDQLFDQVRKNNPTYRQKIYPINGDCILPGLGISLSDRALLIKHCNIVFHGAATV
RFDEKLKLALAINVCGTREIMNLAKEMENLQSTAYANCPHPEIEEKFYSTPISGENGTYL
AEMLDEETLEKMTPALLRDWPNTYTYTKSLAEDYVRAHSKNLPVAVFRPAIVIPTFREPL
RGWIDNMYGPTGIVIGVAAGLLRVLHINKENRAELVPVDMSVNSLIACAYDVGINNHYDE
PPIYNYVTSKKNSISWQDYCDYSILNGVTAPLSKMAWYFTFTMVSSKNLAILLTFLYHTL
PAAIIDGVLVLCGK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g3715.t13 | CDD | cd05236 | FAR-N_SDR_e | 7 | 262 | 5.83959E-87 |
| 6 | g3715.t13 | Gene3D | G3DSA:3.40.50.720 | - | 1 | 285 | 2.9E-48 |
| 2 | g3715.t13 | PANTHER | PTHR11011:SF60 | FATTY ACYL-COA REDUCTASE 2 | 2 | 314 | 1.1E-105 |
| 3 | g3715.t13 | PANTHER | PTHR11011 | MALE STERILITY PROTEIN 2-RELATED | 2 | 314 | 1.1E-105 |
| 1 | g3715.t13 | Pfam | PF07993 | Male sterility protein | 3 | 224 | 4.4E-52 |
| 8 | g3715.t13 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 288 | - |
| 9 | g3715.t13 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 289 | 312 | - |
| 7 | g3715.t13 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 313 | 314 | - |
| 5 | g3715.t13 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 40 | 234 | 3.83E-16 |
| 4 | g3715.t13 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 289 | 311 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0080019 | fatty-acyl-CoA reductase (alcohol-forming) activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed