Gene loci information

Transcript annotation

  • This transcript has been annotated as Fatty acyl-CoA reductase wat.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3715 g3715.t16 isoform g3715.t16 27606653 27612319
chr_3 g3715 g3715.t16 exon g3715.t16.exon1 27606653 27606689
chr_3 g3715 g3715.t16 exon g3715.t16.exon2 27606754 27606929
chr_3 g3715 g3715.t16 cds g3715.t16.CDS1 27606867 27606929
chr_3 g3715 g3715.t16 exon g3715.t16.exon3 27607014 27607142
chr_3 g3715 g3715.t16 cds g3715.t16.CDS2 27607014 27607142
chr_3 g3715 g3715.t16 exon g3715.t16.exon4 27607757 27608005
chr_3 g3715 g3715.t16 cds g3715.t16.CDS3 27607757 27608005
chr_3 g3715 g3715.t16 exon g3715.t16.exon5 27608109 27608221
chr_3 g3715 g3715.t16 cds g3715.t16.CDS4 27608109 27608221
chr_3 g3715 g3715.t16 exon g3715.t16.exon6 27609453 27609527
chr_3 g3715 g3715.t16 cds g3715.t16.CDS5 27609453 27609527
chr_3 g3715 g3715.t16 exon g3715.t16.exon7 27609602 27609679
chr_3 g3715 g3715.t16 cds g3715.t16.CDS6 27609602 27609647
chr_3 g3715 g3715.t16 exon g3715.t16.exon8 27612210 27612319
chr_3 g3715 g3715.t16 TSS g3715.t16 27612316 27612316
chr_3 g3715 g3715.t16 TTS g3715.t16 NA NA

Sequences

>g3715.t16 Gene=g3715 Length=967
TTTAGTTAGATTTTGGTCGTTGTGTCAATCATACGTGCTGACGAGTTAAAAAATAAATAA
ATATAGCGCTTGAGTTGAATATAAAGAATTGCTTAAAGAAGAAAAAAAGAACTTAAATTT
ATAACATAAATAAATAAAGAAAATGGCTCCCTTGCAAGAAACAATCGAAGAATACAATGA
ATTGCAGCAGAGCTCACCGATCCAGCAATTCTACAAGAATAAAAACATCTTCATTACCGG
AGCGACAGGTTTTCTCGGAAAAGTTTTAATTGAGAAACTCTTAAGAGCCTGTGACGTTGA
GAGGATTTTTATATTGATTCGAAGTAAGAAAAATGACGATATTAACACACGTATGGAAAA
AATATTTGAAGATCAATTATTTGATCAAGTGAGAAAAAACAATCCAACTTATCGACAAAA
AATTTATCCAATCAATGGCGACTGCATTTTGCCTGGCTTGGGCATCAGTCTAAGTGACCG
TGCACTGCTCATCAAACACTGCAATATTGTCTTTCATGGTGCAGCTACAGTTAGATTTGA
TGAGAAACTGAAACTTGCTCTTGCAATCAATGTTTGCGGTACAAGAGAAATTATGAATTT
AGCTAAAGAAATGGAAAATCTTCAGGCATTTCTTCATATTTCAACTGCATATGCAAATTG
TCCACATCCTGAAATTGAAGAAAAATTTTATTCAACACCAATCAGCGGAGAGAATGGTAC
ATATTTGGCTGAAATGTTAGATGAAGAAACATTAACTCTTGAGAGACTGGCCCAATACAT
ATACATATACAAAGTCATTGGCAGAAGATTATGTTAGAGCACATTCTAAAAATTTACCAG
TTGCTGTATTTCGTCCTGCAATTGTAATACCAACATTTAGAGAACCACTTAGAGGTTGGA
TCGATAACATGTATGGCCCAACTGGAATTGTTATTGGAGTTGCTGCCGGACTTTTGAGAG
TTTTACA

>g3715.t16 Gene=g3715 Length=224
MAPLQETIEEYNELQQSSPIQQFYKNKNIFITGATGFLGKVLIEKLLRACDVERIFILIR
SKKNDDINTRMEKIFEDQLFDQVRKNNPTYRQKIYPINGDCILPGLGISLSDRALLIKHC
NIVFHGAATVRFDEKLKLALAINVCGTREIMNLAKEMENLQAFLHISTAYANCPHPEIEE
KFYSTPISGENGTYLAEMLDEETLTLERLAQYIYIYKVIGRRLC

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g3715.t16 Gene3D G3DSA:3.40.50.720 - 3 206 0
2 g3715.t16 PANTHER PTHR11011:SF60 FATTY ACYL-COA REDUCTASE 2 16 205 0
3 g3715.t16 PANTHER PTHR11011 MALE STERILITY PROTEIN 2-RELATED 16 205 0
1 g3715.t16 Pfam PF07993 Male sterility protein 31 195 0
4 g3715.t16 SUPERFAMILY SSF51735 NAD(P)-binding Rossmann-fold domains 20 177 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0080019 fatty-acyl-CoA reductase (alcohol-forming) activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed