General information for g3715.t18
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Fatty acyl-CoA reductase wat.
Parent gene
- The parent gene g3715 is located on chr_3: 27608867..27612319 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3715 | g3715.t18 | isoform | g3715.t18 | 27606763 | 27612319 |
| chr_3 | g3715 | g3715.t18 | exon | g3715.t18.exon1 | 27606763 | 27606929 |
| chr_3 | g3715 | g3715.t18 | cds | g3715.t18.CDS1 | 27606764 | 27606929 |
| chr_3 | g3715 | g3715.t18 | exon | g3715.t18.exon2 | 27606997 | 27607142 |
| chr_3 | g3715 | g3715.t18 | cds | g3715.t18.CDS2 | 27606997 | 27607142 |
| chr_3 | g3715 | g3715.t18 | exon | g3715.t18.exon3 | 27607757 | 27608005 |
| chr_3 | g3715 | g3715.t18 | cds | g3715.t18.CDS3 | 27607757 | 27608005 |
| chr_3 | g3715 | g3715.t18 | exon | g3715.t18.exon4 | 27608109 | 27608221 |
| chr_3 | g3715 | g3715.t18 | cds | g3715.t18.CDS4 | 27608109 | 27608221 |
| chr_3 | g3715 | g3715.t18 | exon | g3715.t18.exon5 | 27609453 | 27609527 |
| chr_3 | g3715 | g3715.t18 | cds | g3715.t18.CDS5 | 27609453 | 27609527 |
| chr_3 | g3715 | g3715.t18 | exon | g3715.t18.exon6 | 27609602 | 27609679 |
| chr_3 | g3715 | g3715.t18 | cds | g3715.t18.CDS6 | 27609602 | 27609647 |
| chr_3 | g3715 | g3715.t18 | exon | g3715.t18.exon7 | 27612210 | 27612319 |
| chr_3 | g3715 | g3715.t18 | TSS | g3715.t18 | 27612316 | 27612316 |
| chr_3 | g3715 | g3715.t18 | TTS | g3715.t18 | NA | NA |
Sequences
>g3715.t18 Gene=g3715 Length=938
TTTAGTTAGATTTTGGTCGTTGTGTCAATCATACGTGCTGACGAGTTAAAAAATAAATAA
ATATAGCGCTTGAGTTGAATATAAAGAATTGCTTAAAGAAGAAAAAAAGAACTTAAATTT
ATAACATAAATAAATAAAGAAAATGGCTCCCTTGCAAGAAACAATCGAAGAATACAATGA
ATTGCAGCAGAGCTCACCGATCCAGCAATTCTACAAGAATAAAAACATCTTCATTACCGG
AGCGACAGGTTTTCTCGGAAAAGTTTTAATTGAGAAACTCTTAAGAGCCTGTGACGTTGA
GAGGATTTTTATATTGATTCGAAGTAAGAAAAATGACGATATTAACACACGTATGGAAAA
AATATTTGAAGATCAATTATTTGATCAAGTGAGAAAAAACAATCCAACTTATCGACAAAA
AATTTATCCAATCAATGGCGACTGCATTTTGCCTGGCTTGGGCATCAGTCTAAGTGACCG
TGCACTGCTCATCAAACACTGCAATATTGTCTTTCATGGTGCAGCTACAGTTAGATTTGA
TGAGAAACTGAAACTTGCTCTTGCAATCAATGTTTGCGGTACAAGAGAAATTATGAATTT
AGCTAAAGAAATGGAAAATCTTCAGGCATTTCTTCATATTTCAACTGCATATGCAAATTG
TCCACATCCTGAAATTGAAGAAAAATTTTATTCAACACCAATCAGCGGAGAGAATGGTAC
ATATTTGGCTGAAATGTTAGATGAAGAAACATTAGAAAAAATGACACCAGCACTCTTGAG
AGACTGGCCCAATACATATACATATACAAAGTCATTGGCAGAAGATTATGTTAGAGCACA
TTCTAAAAATTTACCAGTTGCTGTATTTCGTCCTGCAATTGTAATACCAACATTTAGAGA
ACCACTTAGAGGTTGGATCGATAACATGTATGGCCCAA
>g3715.t18 Gene=g3715 Length=265
MAPLQETIEEYNELQQSSPIQQFYKNKNIFITGATGFLGKVLIEKLLRACDVERIFILIR
SKKNDDINTRMEKIFEDQLFDQVRKNNPTYRQKIYPINGDCILPGLGISLSDRALLIKHC
NIVFHGAATVRFDEKLKLALAINVCGTREIMNLAKEMENLQAFLHISTAYANCPHPEIEE
KFYSTPISGENGTYLAEMLDEETLEKMTPALLRDWPNTYTYTKSLAEDYVRAHSKNLPVA
VFRPAIVIPTFREPLRGWIDNMYGP
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g3715.t18 | CDD | cd05236 | FAR-N_SDR_e | 27 | 265 | 0 |
| 5 | g3715.t18 | Gene3D | G3DSA:3.40.50.720 | - | 3 | 264 | 0 |
| 2 | g3715.t18 | PANTHER | PTHR11011:SF60 | FATTY ACYL-COA REDUCTASE 2 | 16 | 265 | 0 |
| 3 | g3715.t18 | PANTHER | PTHR11011 | MALE STERILITY PROTEIN 2-RELATED | 16 | 265 | 0 |
| 1 | g3715.t18 | Pfam | PF07993 | Male sterility protein | 31 | 263 | 0 |
| 4 | g3715.t18 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 20 | 264 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0080019 | fatty-acyl-CoA reductase (alcohol-forming) activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
