General information for g3715.t7
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Fatty acyl-CoA reductase wat.
Parent gene
- The parent gene g3715 is located on chr_3: 27608867..27612319 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3715 | g3715.t7 | TTS | g3715.t7 | 27605604 | 27605604 |
| chr_3 | g3715 | g3715.t7 | isoform | g3715.t7 | 27605725 | 27609664 |
| chr_3 | g3715 | g3715.t7 | exon | g3715.t7.exon1 | 27605725 | 27605979 |
| chr_3 | g3715 | g3715.t7 | cds | g3715.t7.CDS1 | 27605725 | 27605979 |
| chr_3 | g3715 | g3715.t7 | exon | g3715.t7.exon2 | 27606064 | 27606157 |
| chr_3 | g3715 | g3715.t7 | cds | g3715.t7.CDS2 | 27606064 | 27606157 |
| chr_3 | g3715 | g3715.t7 | exon | g3715.t7.exon3 | 27606320 | 27606689 |
| chr_3 | g3715 | g3715.t7 | cds | g3715.t7.CDS3 | 27606320 | 27606689 |
| chr_3 | g3715 | g3715.t7 | exon | g3715.t7.exon4 | 27606754 | 27606929 |
| chr_3 | g3715 | g3715.t7 | cds | g3715.t7.CDS4 | 27606754 | 27606929 |
| chr_3 | g3715 | g3715.t7 | exon | g3715.t7.exon5 | 27606997 | 27607142 |
| chr_3 | g3715 | g3715.t7 | cds | g3715.t7.CDS5 | 27606997 | 27607142 |
| chr_3 | g3715 | g3715.t7 | exon | g3715.t7.exon6 | 27607757 | 27608005 |
| chr_3 | g3715 | g3715.t7 | cds | g3715.t7.CDS6 | 27607757 | 27608005 |
| chr_3 | g3715 | g3715.t7 | exon | g3715.t7.exon7 | 27608109 | 27608210 |
| chr_3 | g3715 | g3715.t7 | cds | g3715.t7.CDS7 | 27608109 | 27608132 |
| chr_3 | g3715 | g3715.t7 | exon | g3715.t7.exon8 | 27609445 | 27609527 |
| chr_3 | g3715 | g3715.t7 | exon | g3715.t7.exon9 | 27609598 | 27609664 |
| chr_3 | g3715 | g3715.t7 | TSS | g3715.t7 | NA | NA |
Sequences
>g3715.t7 Gene=g3715 Length=1542
ATAAATAAATAAAGAAAATGGCTCCCTTGCAAGAAACAATCGAAGAATACAATGAATTGC
AGCGTGAAGAGCTCACCGATCCAGCAATTCTACAAGAATAAAAACATCTTCATTACCGGA
GCGACAGGTTTTCTCGGAAAAGGTTAGTGAAAACTCTTAAGAGCCTGTGACGTTGAGAGG
ATTTTTATATTGATTCGAAGTAAGAAAAATGACGATATTAACACACGTATGGAAAAAATA
TTTGAAGATCAATTATTTGATCAAGTGAGAAAAAACAATCCAACTTATCGACAAAAAATT
TATCCAATCAATGGCGACTGCATTTTGCCTGGCTTGGGCATCAGTCTAAGTGACCGTGCA
CTGCTCATCAAACACTGCAATATTGTCTTTCATGGTGCAGCTACAGTTAGATTTGATGAG
AAACTGAAACTTGCTCTTGCAATCAATGTTTGCGGTACAAGAGAAATTATGAATTTAGCT
AAAGAAATGGAAAATCTTCAGGCATTTCTTCATATTTCAACTGCATATGCAAATTGTCCA
CATCCTGAAATTGAAGAAAAATTTTATTCAACACCAATCAGCGGAGAGAATGGTACATAT
TTGGCTGAAATGTTAGATGAAGAAACATTAGAAAAAATGACACCAGCACTCTTGAGAGAC
TGGCCCAATACATATACATATACAAAGTCATTGGCAGAAGATTATGTTAGAGCACATTCT
AAAAATTTACCAGTTGCTGTATTTCGTCCTGCAATTGTAATACCAACATTTAGAGAACCA
CTTAGAGGTTGGATCGATAACATGTATGGCCCAACTGGAATTGTTATTGGAGTTGCTGCC
GGACTTTTGAGAGTTTTACACATAAACAAAGAGAACAGAGCTGAGCTTGTACCCGTTGAT
ATGTCTGTAAATTCGCTCATTGCCTGTGCTTATGATGTCGGTATAAATAATCATTATGAT
GAGCCACCAATCTACAATTATGTTACAAGCAAAAAAAATTCTATTTCATGGCAAGATTAT
TGCGATTATAGCATTTTAAATGGAGTAACCGCACCATTATCGAAAATGGCTTGGTACTTT
ACATTTACAATGGTCTCATCTAAAAATCTTGCTATATTATTGACCTTCCTCTATCATACA
TTACCGGCTGCAATTATTGATGGTGTTCTTGTATTGTGTGGAAAAACTCCAAAATTACTC
GACACTTACCGAAAAATTCACAAACTCTGCAATGTTTTATCTTATTTCACAAATCGTGTA
TGGAGCTTCAAAAACCACAATGTAGAAAACCTCTGGCGTAAGCTTGACATCAAGGACAAA
GAATTGTTCTTCTTTGACATGAATGATATCGAATGGCCAATGTTTTTTGTTGAAAGTATT
TATGGCATTAGAACATATCTGATGAAGGAAGATCCAAAGACAATACCTGAGGCTTGCAAA
AGGCTTAAAAAGATGAGAATTATTCACTATGTTACTGTTTATGTTATTAGATTTGGAGTT
TTGTATTTTCTATATAAAATTCTTAAATCAATTTTATTTTAA
>g3715.t7 Gene=g3715 Length=437
MEKIFEDQLFDQVRKNNPTYRQKIYPINGDCILPGLGISLSDRALLIKHCNIVFHGAATV
RFDEKLKLALAINVCGTREIMNLAKEMENLQAFLHISTAYANCPHPEIEEKFYSTPISGE
NGTYLAEMLDEETLEKMTPALLRDWPNTYTYTKSLAEDYVRAHSKNLPVAVFRPAIVIPT
FREPLRGWIDNMYGPTGIVIGVAAGLLRVLHINKENRAELVPVDMSVNSLIACAYDVGIN
NHYDEPPIYNYVTSKKNSISWQDYCDYSILNGVTAPLSKMAWYFTFTMVSSKNLAILLTF
LYHTLPAAIIDGVLVLCGKTPKLLDTYRKIHKLCNVLSYFTNRVWSFKNHNVENLWRKLD
IKDKELFFFDMNDIEWPMFFVESIYGIRTYLMKEDPKTIPEACKRLKKMRIIHYVTVYVI
RFGVLYFLYKILKSILF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 14 | g3715.t7 | CDD | cd05236 | FAR-N_SDR_e | 7 | 267 | 5.96385E-91 |
| 15 | g3715.t7 | CDD | cd09071 | FAR_C | 301 | 392 | 4.11295E-35 |
| 8 | g3715.t7 | Gene3D | G3DSA:3.40.50.720 | - | 1 | 289 | 1.1E-53 |
| 3 | g3715.t7 | PANTHER | PTHR11011:SF60 | FATTY ACYL-COA REDUCTASE 2 | 2 | 430 | 1.5E-150 |
| 4 | g3715.t7 | PANTHER | PTHR11011 | MALE STERILITY PROTEIN 2-RELATED | 2 | 430 | 1.5E-150 |
| 1 | g3715.t7 | Pfam | PF07993 | Male sterility protein | 3 | 229 | 1.8E-57 |
| 2 | g3715.t7 | Pfam | PF03015 | Male sterility protein | 302 | 394 | 6.5E-30 |
| 11 | g3715.t7 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 293 | - |
| 13 | g3715.t7 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 294 | 318 | - |
| 9 | g3715.t7 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 319 | 410 | - |
| 12 | g3715.t7 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 411 | 429 | - |
| 10 | g3715.t7 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 430 | 437 | - |
| 7 | g3715.t7 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 40 | 239 | 3.63E-20 |
| 5 | g3715.t7 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 296 | 318 | - |
| 6 | g3715.t7 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 411 | 429 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0080019 | fatty-acyl-CoA reductase (alcohol-forming) activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed