General information for g3717.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g3717 is located on chr_3: 27628959..27630956 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3717 | g3717.t2 | isoform | g3717.t2 | 27622249 | 27623105 |
| chr_3 | g3717 | g3717.t2 | TTS | g3717.t2 | 27622249 | 27622249 |
| chr_3 | g3717 | g3717.t2 | exon | g3717.t2.exon1 | 27622249 | 27623105 |
| chr_3 | g3717 | g3717.t2 | cds | g3717.t2.CDS1 | 27622249 | 27623064 |
| chr_3 | g3717 | g3717.t2 | TSS | g3717.t2 | NA | NA |
Sequences
>g3717.t2 Gene=g3717 Length=857
CTGAACCTGATTATTCTTCATCAGAAGAAGATGAAAAAGAAATGGAACTTGATGATAGTT
CGGTTAATGCTATCGCAAACATTCCATATGATGATGAGTGCACGAATACAATTAGAAAGA
ATGTGCAACGACCTAAAGAAGAACAACAACAGCATCAATTAATGGTTGCAGAAACCTCAG
GCTCAAGTGTTTCCTCGAATAATTCCAATGCAGTCCAACATTCCTTTACCGTAGATGAAA
TTAAAAAAATCCGTACAAATCTAAAATCATCATCGAAATCCATTGCAGCAACATCACTTG
AAGGTGATAACAATTCATCATCTGGCGTTAGCAGTGATCAAGAAGTGAAAAATTCAACAC
CAGTCATCGTTCCTAAAGAAATTGAGCCGAAGAAAGTAATAATTTCGACTGAAGATGCAC
CAAGTGATGAAGACAGTCCACCTTTGGCTGAATTTCAACGTAATAATTCGCTCACAAGAA
AGCAAGCATCAATTATTGCTGCAAATAGAGCGAAAGCAATTTCAAACCGACAAATGGCAC
ATGGAATTGTTTCTTTAACTCAACTGCCACCACCAATTGAAGCCTATTCTGATGATGAGG
ATGAAAATGATAAGGAAATTTTTGCACCACCTCCACCAGAATTTAGTGACATTGTTTCGA
ACACTAGATCATTGCATATTAATAGTCATGACTATCATCAACCAAATCATCATCATGTAC
AGCAAAAAAGTGTAAGAATTGTTGGTGCATTACCGAAACAAGTCAACTATGTGCCATCAA
CTGAAAAAGTTCGAAGTGGTTCGCATCAACATCATCATATTCATCATTTTCATCATGGTC
ATCATCAACACCATTAG
>g3717.t2 Gene=g3717 Length=271
MELDDSSVNAIANIPYDDECTNTIRKNVQRPKEEQQQHQLMVAETSGSSVSSNNSNAVQH
SFTVDEIKKIRTNLKSSSKSIAATSLEGDNNSSSGVSSDQEVKNSTPVIVPKEIEPKKVI
ISTEDAPSDEDSPPLAEFQRNNSLTRKQASIIAANRAKAISNRQMAHGIVSLTQLPPPIE
AYSDDEDENDKEIFAPPPPEFSDIVSNTRSLHINSHDYHQPNHHHVQQKSVRIVGALPKQ
VNYVPSTEKVRSGSHQHHHIHHFHHGHHQHH
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 1 | g3717.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 29 | 55 | - |
| 5 | g3717.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 34 | 55 | - |
| 2 | g3717.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 85 | 104 | - |
| 3 | g3717.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 248 | 271 | - |
| 4 | g3717.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 254 | 271 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
