General information for g3717.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative SH3 and multiple ankyrin repeat domains protein 3.
Parent gene
- The parent gene g3717 is located on chr_3: 27628959..27630956 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3717 | g3717.t3 | isoform | g3717.t3 | 27626393 | 27628439 |
| chr_3 | g3717 | g3717.t3 | exon | g3717.t3.exon1 | 27626393 | 27627484 |
| chr_3 | g3717 | g3717.t3 | exon | g3717.t3.exon2 | 27627547 | 27627644 |
| chr_3 | g3717 | g3717.t3 | exon | g3717.t3.exon3 | 27627705 | 27628048 |
| chr_3 | g3717 | g3717.t3 | cds | g3717.t3.CDS1 | 27627847 | 27628048 |
| chr_3 | g3717 | g3717.t3 | exon | g3717.t3.exon4 | 27628108 | 27628439 |
| chr_3 | g3717 | g3717.t3 | cds | g3717.t3.CDS2 | 27628108 | 27628412 |
| chr_3 | g3717 | g3717.t3 | TSS | g3717.t3 | NA | NA |
| chr_3 | g3717 | g3717.t3 | TTS | g3717.t3 | NA | NA |
Sequences
>g3717.t3 Gene=g3717 Length=1866
CTCAAATACAAACGTCGTGTCTATAAAATGTTGAACTTGGACGAACGACAATTGCGTGCA
TTGCATTCTCGATCGAATTTGAGAAGATTTTTGGAATGCATACATGGTGGTCATGTGGAT
AAAGTGTCAAAAATGTGTGCAAAAGGACTCGATCCAAATTTTCATTGCAATGAAACTGGC
GAGACACCATTAACAATAGCAGCATGTGCAAAAAAGCCGCAAAAATTATTAATTGCTCTT
GTAAATGGTGGAGCATTGCTTGATTATAGAACTAAAGATGGAAGTACAGCTCTTCATCGT
GCTGTTGAAAAGGATTCACTTGAAGCTGTTACAACACTGCTTGAACTCGGTGCTTCACCA
AATTATAAAGATATGAAAATGCTAACACCCGTTTATATTTCGGTTGCAAAGAAAATCGAT
CCGAAAATAACTGAGGTGCTATTGCATGATCATGCCACATTGGGAACGAAAGATTCGCAG
GGTTGGAATGAAGTTCATCAGGTTAGATTGTTGTTGTTCTTTTTTCTATGTTAAGACGAT
TATATGATTTTTTCTCGATTTATTAATTCTCATATATAGGCTTGCCGAAATAACCTAGTT
CAGCATTTGGAACATCTGCTGGCCTACGGTGCGGATATGGATAGTAAAAATTCCACTGGA
AACACACCACTGCATGTGTGCGCAGTCAATAATCAAGAGACATGTGCCAGAATTCTATTG
TTTCGTGGTGCCAATCGAGAGGCACTAAACTATGCCAATCAGACTCCTTATCAGGTGGCC
GTCATTGCAAGTAACTTTGAATTAGCCGATATGATACAAAACTTCAGGAACGAACATGTT
GGTTAGTAAAAAAAATTTCCATCAAACGACTAAATTGCATCAATTCATGCATACAAGTTA
AAATTTTTATTACATTCTCTCTCTCTGTTCTCCCTATATAATTTTTTTATTGACTTGTTT
TGTGTGTTCAATATAGAGAAATGTTAATATCTTTCATGAATCGTTACTTTTTTTTCGCTT
ATTTACTTCTAAATTCATTATATTGCAAGCACTAAACAGTTCTCATATATGAGTGAAATG
GAAGTTGAAAAGAAAATAAAAAAAACCTAAAACCTCATGTAGATAATTAGAGAGTGATTA
GAAATGCAATTACAATTATTATAGAGCACTCAATTCTATTATAAAGAAGAGTTGAAAATT
TTGAACTATAACGGATATTGGTAATTTGAATTTTAAAATTATCTAAATTTCCGTTAATTT
TATTTTAAAAGTGTCATCTTAGAAGATTGACGGAATAATAAATGTCAACTTCCTGATCGA
CAAAAAAATGAGAACTTTAGTACTTCTAATAGTGTCAAATGCTTCAAAATCATTTTATAT
GTGTTTTTTAGAAATCTTTTGCTATTCCAATTGTTCAGTTTCCTCAAAATTTTCTCATAA
AATCCATAAATTTGATTTTATTATTTTATTCATAACCATTTCTTAGTCATTTTCAAAATT
TTTAGCATATTGCAACAAATTACACGTATTTGCAGTTTTTCTCTCTTTCTATCTCTCATA
TGTGTTAGTTACTTGACTTAGCAAAATATAATTTTTTTATTTCAAGTATCACGATACCAC
GCGTTTATGTCACGCAAAGACAATTATTTACTCGCTCATAAATTTTGCGCTCACTGCTGT
TTGTTGTCGCTGTGCTGCGGAGAAAGAAAATTGTGCAATATGCTTAGGCTAAAAAAAGAA
GTTTTGTAGAAACTGTTGAGAGGAGTTATTTTTCAATCACATCAAACAGACACACACAGA
GACAATCTCATGACTATCAGAATTTGACCTTGCTAAGATATAAGAATTAATAGAATATTT
TTTTCT
>g3717.t3 Gene=g3717 Length=168
MLNLDERQLRALHSRSNLRRFLECIHGGHVDKVSKMCAKGLDPNFHCNETGETPLTIAAC
AKKPQKLLIALVNGGALLDYRTKDGSTALHRAVEKDSLEAVTTLLELGASPNYKDMKMLT
PVYISVAKKIDPKITEVLLHDHATLGTKDSQGWNEVHQVRLLLFFFLC
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g3717.t3 | Gene3D | G3DSA:1.25.40.20 | - | 2 | 162 | 0.00000 |
| 2 | g3717.t3 | PANTHER | PTHR24135:SF18 | LD13733P | 1 | 158 | 0.00000 |
| 3 | g3717.t3 | PANTHER | PTHR24135 | SH3 AND MULTIPLE ANKYRIN REPEAT DOMAINS PROTEIN | 1 | 158 | 0.00000 |
| 1 | g3717.t3 | Pfam | PF12796 | Ankyrin repeats (3 copies) | 27 | 115 | 0.00000 |
| 8 | g3717.t3 | ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 28 | 157 | 24.16100 |
| 9 | g3717.t3 | ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 84 | 116 | 12.44900 |
| 6 | g3717.t3 | SMART | SM00248 | ANK_2a | 50 | 80 | 240.00000 |
| 5 | g3717.t3 | SMART | SM00248 | ANK_2a | 84 | 113 | 0.00054 |
| 4 | g3717.t3 | SUPERFAMILY | SSF48403 | Ankyrin repeat | 20 | 157 | 0.00000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
