General information for g3722.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Beta-arrestin-1.
Parent gene
- The parent gene g3722 is located on chr_3: 27647989..27650034 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3722 | g3722.t4 | isoform | g3722.t4 | 27647989 | 27650034 |
| chr_3 | g3722 | g3722.t4 | exon | g3722.t4.exon1 | 27647989 | 27647996 |
| chr_3 | g3722 | g3722.t4 | cds | g3722.t4.CDS1 | 27647989 | 27647996 |
| chr_3 | g3722 | g3722.t4 | exon | g3722.t4.exon2 | 27648084 | 27648234 |
| chr_3 | g3722 | g3722.t4 | cds | g3722.t4.CDS2 | 27648084 | 27648234 |
| chr_3 | g3722 | g3722.t4 | exon | g3722.t4.exon3 | 27648295 | 27648437 |
| chr_3 | g3722 | g3722.t4 | cds | g3722.t4.CDS3 | 27648295 | 27648437 |
| chr_3 | g3722 | g3722.t4 | exon | g3722.t4.exon4 | 27648559 | 27648650 |
| chr_3 | g3722 | g3722.t4 | cds | g3722.t4.CDS4 | 27648559 | 27648650 |
| chr_3 | g3722 | g3722.t4 | exon | g3722.t4.exon5 | 27648738 | 27649068 |
| chr_3 | g3722 | g3722.t4 | cds | g3722.t4.CDS5 | 27648738 | 27648814 |
| chr_3 | g3722 | g3722.t4 | exon | g3722.t4.exon6 | 27649792 | 27650034 |
| chr_3 | g3722 | g3722.t4 | TSS | g3722.t4 | 27650033 | 27650033 |
| chr_3 | g3722 | g3722.t4 | TTS | g3722.t4 | NA | NA |
Sequences
>g3722.t4 Gene=g3722 Length=968
AATTCATTCGCAAATTTTTCTTCTCTAAGTTTTGAAAAAAGTTTAATTTTTCGTGATTTT
GGTTTTATATTACAAAAAATAGTGTACTATTAAAGAAAATGTATAATATAAGTACCAGAA
GAGAATATAAACAAATTATTTTGTGACCAAGTATTGTGTTTCAAAGCCAAATTTATCGAG
TTCTTAGAAAAGAGAAAAATCATATTCAAAAGAATTAATCATTAATCTCCGAAAAAAACT
ATGATAAAATCAAGAGTATAAAAAGAAAAATAAAAAGTATCGAAGGATGTTCTGAAACAA
TCATCAAACACAAATATATACATATAGCTCATAATAAATTTTATAGCAAGCAACCGAGCT
AGAACGCATAATACATAGTTTATTTCTGCCTATAGAGTAACACATAATAAAATAAAACAT
TAGAGAAACAGAGTGAGTAACAAGTTGAAATAAATAGAGGAATGAAAAAATTAGATACAC
ATATAGTGTCATCCGCAATGCAAACAACGTCGTCTCATTCACCAAACCCTTCTCCTGAAA
TTGATGATGCTAGTTCGAAACGACAAGCCACACGTGTTTTCAAAAAATCTTCTGCAAATG
GAAAAATTACAGTATATCTGGGCAAGCGAGATTTTGTCGATCACATTACGCACGTCGATC
CAATCGACGGTGTTGTTCTCATCGATCCGGATTATATGAAAGATAGAAAAGTATTTGGTC
ACGTTTTGGCTGCATTTCGGTATGGTCGCGAGGATTTGGATGTCTTAGGATTAACATTTC
GCAAAGACCTTTACTTGGCATCAGAACAAATTTACCCCTGCTTACAAGATGTGAATGAAA
GAAGGCCATTAACACGCTTACAGGAACGTCTCATAAAGAAATTAGGACCAAATGCATATC
CATTCTATTTTGAATTGCCACCACATTGTCCAGCCAGCGTTTCACTTCAACCAGCGCCTG
GTGACACA
>g3722.t4 Gene=g3722 Length=157
MQTTSSHSPNPSPEIDDASSKRQATRVFKKSSANGKITVYLGKRDFVDHITHVDPIDGVV
LIDPDYMKDRKVFGHVLAAFRYGREDLDVLGLTFRKDLYLASEQIYPCLQDVNERRPLTR
LQERLIKKLGPNAYPFYFELPPHCPASVSLQPAPGDT
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g3722.t4 | Gene3D | G3DSA:2.60.40.840 | - | 19 | 157 | 1.6E-65 |
| 8 | g3722.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - |
| 9 | g3722.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 18 | - |
| 2 | g3722.t4 | PANTHER | PTHR11792 | ARRESTIN | 21 | 157 | 2.9E-62 |
| 3 | g3722.t4 | PANTHER | PTHR11792:SF17 | KURTZ ARRESTIN | 21 | 157 | 2.9E-62 |
| 5 | g3722.t4 | PRINTS | PR00309 | Arrestin signature | 43 | 65 | 5.3E-22 |
| 4 | g3722.t4 | PRINTS | PR00309 | Arrestin signature | 80 | 98 | 5.3E-22 |
| 1 | g3722.t4 | Pfam | PF00339 | Arrestin (or S-antigen), N-terminal domain | 38 | 149 | 5.3E-23 |
| 7 | g3722.t4 | ProSitePatterns | PS00295 | Arrestins signature. | 80 | 98 | - |
| 6 | g3722.t4 | SUPERFAMILY | SSF81296 | E set domains | 25 | 157 | 2.8E-55 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0007165 | signal transduction | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
