Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative (11Z)-hexadec-11-enoyl-CoA conjugase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3725 g3725.t2 isoform g3725.t2 27671028 27672160
chr_3 g3725 g3725.t2 exon g3725.t2.exon1 27671028 27671156
chr_3 g3725 g3725.t2 cds g3725.t2.CDS1 27671113 27671156
chr_3 g3725 g3725.t2 exon g3725.t2.exon2 27671373 27671555
chr_3 g3725 g3725.t2 cds g3725.t2.CDS2 27671373 27671555
chr_3 g3725 g3725.t2 exon g3725.t2.exon3 27671617 27671777
chr_3 g3725 g3725.t2 cds g3725.t2.CDS3 27671617 27671777
chr_3 g3725 g3725.t2 exon g3725.t2.exon4 27671919 27672160
chr_3 g3725 g3725.t2 cds g3725.t2.CDS4 27671919 27672160
chr_3 g3725 g3725.t2 TTS g3725.t2 27672325 27672325
chr_3 g3725 g3725.t2 TSS g3725.t2 NA NA

Sequences

>g3725.t2 Gene=g3725 Length=715
AAAACGGGGATTCTTTTTCTCGCATTGCGGTTGGTTGTTCATACGTAAGCATCCAGACGT
TACTACATTTGGGAAGAAAGTCGATATGTCTGATTTGGAAAATGATAAAGTTTTGCTATT
TCATAAAATGATTTACATGCCTGCATCGTGGATTGTCGCATTTATTGGACCAGTATGGGG
TGCGCATTATTTGTGGGGCGAGGACTTAAGTGCATCGTGGCATTTTAATGTCGTTAGATA
TACACTCGGACTTCATGTCAATTGGAGTATTAATTCATTTGCACATATCTGGGGCATGCG
ACCTTTCGATAGAAACAACTCATCAAGAGACAGCTATATATTTGGATTCTTGGCATTTGG
TGAAGGATGGCATAACTTCCATCATGCTTTCCCTTGGGATTATAAAACCGGAGAACTTGG
AAATTATTGGTTCAATTTTTCAATGATATTCATCGATTTCTTCGCTTGGTTAGGATGGGC
GACCGATCTCAAGACAGTCCCCGATTCTGTTGTGAAGAAACGAGTGTTGAGAACAGGAGA
TGGAACTCACCGATATTCAATTGAAGCAAAAAAGAACAATGAAAAGATTGAAGAAGAAGT
TAAAAATAATAACGACGGTGAAAGGGATCTTGATCATTTCTGGGGTTGGGGAGATGAAGA
TATGCAATGTGAAGATATCAAAGATGTCGCAATTCTTCATAAACATTATGAATAG

>g3725.t2 Gene=g3725 Length=209
MSDLENDKVLLFHKMIYMPASWIVAFIGPVWGAHYLWGEDLSASWHFNVVRYTLGLHVNW
SINSFAHIWGMRPFDRNNSSRDSYIFGFLAFGEGWHNFHHAFPWDYKTGELGNYWFNFSM
IFIDFFAWLGWATDLKTVPDSVVKKRVLRTGDGTHRYSIEAKKNNEKIEEEVKNNNDGER
DLDHFWGWGDEDMQCEDIKDVAILHKHYE

Protein features from InterProScan

Transcript Database ID Name Start End E.value
18 g3725.t2 CDD cd03505 Delta9-FADS-like 49 136 2.49772E-33
1 g3725.t2 PANTHER PTHR11351 ACYL-COA DESATURASE 1 174 3.3E-53
2 g3725.t2 PANTHER PTHR11351:SF31 RE43130P 1 174 3.3E-53
3 g3725.t2 PRINTS PR00075 Fatty acid desaturase family 1 signature 17 35 1.8E-14
5 g3725.t2 PRINTS PR00075 Fatty acid desaturase family 1 signature 49 70 1.8E-14
4 g3725.t2 PRINTS PR00075 Fatty acid desaturase family 1 signature 92 106 1.8E-14
10 g3725.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 15 -
17 g3725.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 16 37 -
13 g3725.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 38 48 -
14 g3725.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 49 71 -
9 g3725.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 72 82 -
16 g3725.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 83 102 -
12 g3725.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 103 113 -
15 g3725.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 114 131 -
11 g3725.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 132 209 -
8 g3725.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 15 37 -
6 g3725.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 49 71 -
7 g3725.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 111 133 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0055114 NA NA
GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values