General information for g3725.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative (11Z)-hexadec-11-enoyl-CoA conjugase.
Parent gene
- The parent gene g3725 is located on chr_3: 27671371..27672160 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3725 | g3725.t3 | isoform | g3725.t3 | 27671371 | 27672160 |
| chr_3 | g3725 | g3725.t3 | exon | g3725.t3.exon1 | 27671371 | 27671555 |
| chr_3 | g3725 | g3725.t3 | cds | g3725.t3.CDS1 | 27671380 | 27671555 |
| chr_3 | g3725 | g3725.t3 | exon | g3725.t3.exon2 | 27671617 | 27671777 |
| chr_3 | g3725 | g3725.t3 | cds | g3725.t3.CDS2 | 27671617 | 27671777 |
| chr_3 | g3725 | g3725.t3 | exon | g3725.t3.exon3 | 27671919 | 27672160 |
| chr_3 | g3725 | g3725.t3 | cds | g3725.t3.CDS3 | 27671919 | 27672160 |
| chr_3 | g3725 | g3725.t3 | TTS | g3725.t3 | 27672325 | 27672325 |
| chr_3 | g3725 | g3725.t3 | TSS | g3725.t3 | NA | NA |
Sequences
>g3725.t3 Gene=g3725 Length=588
AGGATTTACATGCCTGCATCGTGGATTGTCGCATTTATTGGACCAGTATGGGGTGCGCAT
TATTTGTGGGGCGAGGACTTAAGTGCATCGTGGCATTTTAATGTCGTTAGATATACACTC
GGACTTCATGTCAATTGGAGTATTAATTCATTTGCACATATCTGGGGCATGCGACCTTTC
GATAGAAACAACTCATCAAGAGACAGCTATATATTTGGATTCTTGGCATTTGGTGAAGGA
TGGCATAACTTCCATCATGCTTTCCCTTGGGATTATAAAACCGGAGAACTTGGAAATTAT
TGGTTCAATTTTTCAATGATATTCATCGATTTCTTCGCTTGGTTAGGATGGGCGACCGAT
CTCAAGACAGTCCCCGATTCTGTTGTGAAGAAACGAGTGTTGAGAACAGGAGATGGAACT
CACCGATATTCAATTGAAGCAAAAAAGAACAATGAAAAGATTGAAGAAGAAGTTAAAAAT
AATAACGACGGTGAAAGGGATCTTGATCATTTCTGGGGTTGGGGAGATGAAGATATGCAA
TGTGAAGATATCAAAGATGTCGCAATTCTTCATAAACATTATGAATAG
>g3725.t3 Gene=g3725 Length=192
MPASWIVAFIGPVWGAHYLWGEDLSASWHFNVVRYTLGLHVNWSINSFAHIWGMRPFDRN
NSSRDSYIFGFLAFGEGWHNFHHAFPWDYKTGELGNYWFNFSMIFIDFFAWLGWATDLKT
VPDSVVKKRVLRTGDGTHRYSIEAKKNNEKIEEEVKNNNDGERDLDHFWGWGDEDMQCED
IKDVAILHKHYE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 13 | g3725.t3 | CDD | cd03505 | Delta9-FADS-like | 32 | 119 | 4.66748E-33 |
| 1 | g3725.t3 | PANTHER | PTHR11351 | ACYL-COA DESATURASE | 4 | 157 | 1.0E-46 |
| 2 | g3725.t3 | PANTHER | PTHR11351:SF31 | RE43130P | 4 | 157 | 1.0E-46 |
| 4 | g3725.t3 | PRINTS | PR00075 | Fatty acid desaturase family 1 signature | 32 | 53 | 4.5E-12 |
| 3 | g3725.t3 | PRINTS | PR00075 | Fatty acid desaturase family 1 signature | 75 | 89 | 4.5E-12 |
| 8 | g3725.t3 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 15 | - |
| 9 | g3725.t3 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 2 | - |
| 10 | g3725.t3 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 3 | 10 | - |
| 12 | g3725.t3 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 11 | 15 | - |
| 7 | g3725.t3 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 16 | 96 | - |
| 11 | g3725.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 97 | 114 | - |
| 6 | g3725.t3 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 115 | 192 | - |
| 5 | g3725.t3 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 15 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0055114 | NA | NA |
| GO:0016717 | oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
