General information for g373.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Torso-like protein.
Parent gene
- The parent gene g373 is located on chr_3: 3056019..3060467 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g373 | g373.t2 | isoform | g373.t2 | 3056019 | 3056988 |
| chr_3 | g373 | g373.t2 | exon | g373.t2.exon1 | 3056019 | 3056327 |
| chr_3 | g373 | g373.t2 | cds | g373.t2.CDS1 | 3056019 | 3056327 |
| chr_3 | g373 | g373.t2 | exon | g373.t2.exon2 | 3056398 | 3056487 |
| chr_3 | g373 | g373.t2 | cds | g373.t2.CDS2 | 3056398 | 3056487 |
| chr_3 | g373 | g373.t2 | exon | g373.t2.exon3 | 3056560 | 3056988 |
| chr_3 | g373 | g373.t2 | cds | g373.t2.CDS3 | 3056560 | 3056928 |
| chr_3 | g373 | g373.t2 | TSS | g373.t2 | NA | NA |
| chr_3 | g373 | g373.t2 | TTS | g373.t2 | NA | NA |
Sequences
>g373.t2 Gene=g373 Length=828
GGATTAAACATCCAAGAAACACCGGAAGACAATTCGAAAAATTTCAATGGCGACTTTCAT
ATGGAATTTTGTGACAACAAACAACAACTGTTTCAAGCCTATTTTCGTGAATTTAAGATT
GAACAAATGTCTAGTCCATACAAAGCCTTCCAGAGTGGCTGGCATGCTGAAATATCGGCA
AAAAAATTGGGAATTAATTCATCGTATATTATCGGTGATACATACAGCTATGTGCTAGTG
CGTGTATCAAGGTTCCGCGAGAGCGCAAAATTGAGAAAGCCAATTGCACCAAATCAGCCA
ATAGAGGCGAGTGCACTTGAAAAAATAAAGAATGTTACAGTTGGAAACACTGTTTCAGTG
CTACAATTTATTGAGAAATTTGGTAGTCATTACATCAATAGTTATGTAACAGGCAATAGT
TTGTATCAGGTGTTTGTTTTTAATAAACAAAACTACAAGCACATTAAAGAAAGATTAAAA
TCTCGAGGCGTTCTATCGCTGTCAAAAAGCGATCTTTATAACTTTTTTGCTCCCTGGTTT
GCTGAACATCTCGGAAGCATAAGATGTGCTTCTGGTAATTCATCAGTCGAACGATGGGCA
TCGAGAAAGCTAAAATTAAGCTACTACCTCTTTACCTATAACAGTCTTTTAAAACTTCAT
GGATCTAATTCGCTGCTTAAAGCACTTGATGAGTTATTAGGGAACGAGGCAATTTTGCAA
TTAGAGCTAAAATCATTAGACGTTGCTTTTAAAGATACAGATAAGCGTCGATGGTATCAA
ATTATTTTAGACAATACAATAAAGCTTTGGGAAGTAAATATGAGCTAA
>g373.t2 Gene=g373 Length=255
MEFCDNKQQLFQAYFREFKIEQMSSPYKAFQSGWHAEISAKKLGINSSYIIGDTYSYVLV
RVSRFRESAKLRKPIAPNQPIEASALEKIKNVTVGNTVSVLQFIEKFGSHYINSYVTGNS
LYQVFVFNKQNYKHIKERLKSRGVLSLSKSDLYNFFAPWFAEHLGSIRCASGNSSVERWA
SRKLKLSYYLFTYNSLLKLHGSNSLLKALDELLGNEAILQLELKSLDVAFKDTDKRRWYQ
IILDNTIKLWEVNMS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g373.t2 | SMART | SM00457 | MACPF_8 | 55 | 248 | 1e-07 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
