Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Transcription factor kayak.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3732 g3732.t1 isoform g3732.t1 27715044 27720697
chr_3 g3732 g3732.t1 exon g3732.t1.exon1 27715044 27715211
chr_3 g3732 g3732.t1 cds g3732.t1.CDS1 27715044 27715211
chr_3 g3732 g3732.t1 TSS g3732.t1 27715054 27715054
chr_3 g3732 g3732.t1 exon g3732.t1.exon2 27719253 27719357
chr_3 g3732 g3732.t1 cds g3732.t1.CDS2 27719253 27719357
chr_3 g3732 g3732.t1 exon g3732.t1.exon3 27719416 27720248
chr_3 g3732 g3732.t1 cds g3732.t1.CDS3 27719416 27720248
chr_3 g3732 g3732.t1 exon g3732.t1.exon4 27720331 27720697
chr_3 g3732 g3732.t1 cds g3732.t1.CDS4 27720331 27720697
chr_3 g3732 g3732.t1 TTS g3732.t1 27721439 27721439

Sequences

>g3732.t1 Gene=g3732 Length=1473
ATGAAGCTACGCATTCCACGACGAATAAAAGTCGAAGACGAATCTTCAGAAGAGTCTGAG
AATGAACCTATTGCTGATGAAACAGAAACAACTACGAGTGGCAGCAAAGTTGTTCTTGCA
CAACAGGAAGATAGTCAAGTACATGCAAATACAAAGTCGATTGCTGTGTTCGTTACAAGC
GATTCAGGATACAACGGTTTGAGTGTGATTAGTTGCCCACCAACACGAACAACCTCAACA
TTAACACCTACAACACTAAGAAATATTGAACAGACATTTCAAGATCTCACCAACGATTCA
TCACAAGCTGCCCCATATCAGGCTGGATTTGTGCCACCATTGCCCGCTCCAATTTCAAGT
CACGATCAATATATGCCTCCGTATCAAAGTCAACAAGCCATGATTCCCGCTTTTCTTACT
GAGGATGCAAATAATAGTATCGAATCACTTGAAACAACGAGTTCTATGTCTGATAGCTCA
ATTATGGATGAAGTTGTAAATGCCAGTAATGGCAAAGGCCGTCCTAGAACAAACTATGCA
CCCGCTGCAGTTGTAAACAATGGTCAACCAAAGCGTCGCAATGCTGGTGGTCGAAAACCA
AATAAACCTTCAAATTTATCGCCAGAAGAAGAAGAAAAGCGTAGAATTCGTCGTGAACGA
AATAAACAAGCAGCGGCGCGGTGTCGAAGAAGACGAGAAGATCATACACAAGATTTGCAG
GGACAAGTCGATGAAATGGAAGAAAAGAAACGCCAGTTGACTCAAGAAATTCAACAAATG
AGCAAAATGCGTGACGAACTTTGTGAATTAATTGAAGAGCACAAAAAATCAAATGAATGC
AATATGGTCATTCGTGGAGGCTCACCAACTGACATAAAGCCAAGTGTGACTTATAATGGA
AAAATTAGTGCAATACCATCGATGACAACAACAACAACAATACAGCGTCCAACAACTTTC
ATTACAGCGCTCTCAAATAATAACAATAGCAACGTACTGAATGCCAATAATAATAACAAT
AACATCAATAAATTGTCGCTCAAAATTAAAGCTGAGCCTGAAGACTATTATGATGATGAA
CCACCTAGCAAAAGAAGATGTAATATGCTCTCGGGACAAGAGTATGATATAACAACACCA
ACAACTCCTTACGTTCCTCAACTTAATACACCGACATTTATTCCGACCAAGCAATCTTTA
TGTAAGCCAAATAGACCATCATCACTAAATGTTGCCTCAAATTTAAAACCATCAGAGTCT
TTAGCGCGCAAAAATGTCACAGAAATTGCAGGAGTCAATGTATGCACGCCTTCAACAGGA
ATGTTCAATTTCGACAGTCTCATGGAAGGAGGTACTGGTCTGACGCCAATCACATCAAAT
CCTCTTATTCCCTGTTCAACACAAAATCGCAATCCTTTAGAAATGTTTAACACTCCGACA
AGCGGAAGCGAAAGCAAGCTTGTTAGCCTTTGA

>g3732.t1 Gene=g3732 Length=490
MKLRIPRRIKVEDESSEESENEPIADETETTTSGSKVVLAQQEDSQVHANTKSIAVFVTS
DSGYNGLSVISCPPTRTTSTLTPTTLRNIEQTFQDLTNDSSQAAPYQAGFVPPLPAPISS
HDQYMPPYQSQQAMIPAFLTEDANNSIESLETTSSMSDSSIMDEVVNASNGKGRPRTNYA
PAAVVNNGQPKRRNAGGRKPNKPSNLSPEEEEKRRIRRERNKQAAARCRRRREDHTQDLQ
GQVDEMEEKKRQLTQEIQQMSKMRDELCELIEEHKKSNECNMVIRGGSPTDIKPSVTYNG
KISAIPSMTTTTTIQRPTTFITALSNNNNSNVLNANNNNNNINKLSLKIKAEPEDYYDDE
PPSKRRCNMLSGQEYDITTPTTPYVPQLNTPTFIPTKQSLCKPNRPSSLNVASNLKPSES
LARKNVTEIAGVNVCTPSTGMFNFDSLMEGGTGLTPITSNPLIPCSTQNRNPLEMFNTPT
SGSESKLVSL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g3732.t1 Coils Coil Coil 232 270 -
8 g3732.t1 Gene3D G3DSA:1.20.5.170 - 212 267 7.3E-17
15 g3732.t1 MobiDBLite mobidb-lite consensus disorder prediction 1 35 -
16 g3732.t1 MobiDBLite mobidb-lite consensus disorder prediction 1 15 -
13 g3732.t1 MobiDBLite mobidb-lite consensus disorder prediction 169 248 -
12 g3732.t1 MobiDBLite mobidb-lite consensus disorder prediction 204 219 -
14 g3732.t1 MobiDBLite mobidb-lite consensus disorder prediction 226 248 -
2 g3732.t1 PANTHER PTHR23351:SF24 TRANSCRIPTION FACTOR KAYAK, ISOFORMS A/B/F 71 467 3.7E-41
3 g3732.t1 PANTHER PTHR23351 FOS TRANSCRIPTION FACTOR-RELATED 71 467 3.7E-41
5 g3732.t1 PRINTS PR00042 Fos transforming protein signature 204 220 7.3E-15
6 g3732.t1 PRINTS PR00042 Fos transforming protein signature 221 237 7.3E-15
4 g3732.t1 PRINTS PR00042 Fos transforming protein signature 239 260 7.3E-15
1 g3732.t1 Pfam PF00170 bZIP transcription factor 209 267 7.2E-9
11 g3732.t1 ProSitePatterns PS00036 Basic-leucine zipper (bZIP) domain signature. 217 231 -
17 g3732.t1 ProSiteProfiles PS50217 Basic-leucine zipper (bZIP) domain profile. 211 274 12.082
10 g3732.t1 SMART SM00338 brlzneu 209 273 9.6E-12
7 g3732.t1 SUPERFAMILY SSF57959 Leucine zipper domain 213 270 3.45E-13

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006357 regulation of transcription by RNA polymerase II BP
GO:0003677 DNA binding MF
GO:0006355 regulation of transcription, DNA-templated BP
GO:0003700 DNA-binding transcription factor activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values