General information for g3732.t10
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g3732 is located on chr_3: 27720249..27721768 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3732 | g3732.t10 | isoform | g3732.t10 | 27719125 | 27720248 |
| chr_3 | g3732 | g3732.t10 | exon | g3732.t10.exon1 | 27719125 | 27719357 |
| chr_3 | g3732 | g3732.t10 | exon | g3732.t10.exon2 | 27719416 | 27720248 |
| chr_3 | g3732 | g3732.t10 | cds | g3732.t10.CDS1 | 27719515 | 27720246 |
| chr_3 | g3732 | g3732.t10 | TSS | g3732.t10 | NA | NA |
| chr_3 | g3732 | g3732.t10 | TTS | g3732.t10 | NA | NA |
Sequences
>g3732.t10 Gene=g3732 Length=1066
ATGGATGCTTGTGAAATTGCAAATTTTCTTGCAAGTGAACTTTTTATGAATCAGGTTAAT
TTGAATACCAAAAAAAACTTTACATGTCGTTTTAACATTGAATTAATTTTTACTTCTTTC
AATTTCAGTTCGTTACAAGCGATTCAGGATACAACGGTTTGAGTGTGATTAGTTGCCCAC
CAACACGAACAACCTCAACATTAACACCTACAACACTAAGAAATATTGAACAGACATTTC
AAGATCTCACCAACGATTCATCACAAGCTGCCCCATATCAGGCTGGATTTGTGCCACCAT
TGCCCGCTCCAATTTCAAGTCACGATCAATATATGCCTCCGTATCAAAGTCAACAAGCCA
TGATTCCCGCTTTTCTTACTGAGGATGCAAATAATAGTATCGAATCACTTGAAACAACGA
GTTCTATGTCTGATAGCTCAATTATGGATGAAGTTGTAAATGCCAGTAATGGCAAAGGCC
GTCCTAGAACAAACTATGCACCCGCTGCAGTTGTAAACAATGGTCAACCAAAGCGTCGCA
ATGCTGGTGGTCGAAAACCAAATAAACCTTCAAATTTATCGCCAGAAGAAGAAGAAAAGC
GTAGAATTCGTCGTGAACGAAATAAACAAGCAGCGGCGCGGTGTCGAAGAAGACGAGAAG
ATCATACACAAGATTTGCAGGGACAAGTCGATGAAATGGAAGAAAAGAAACGCCAGTTGA
CTCAAGAAATTCAACAAATGAGCAAAATGCGTGACGAACTTTGTGAATTAATTGAAGAGC
ACAAAAAATCAAATGAATGCAATATGGTCATTCGTGGAGGCTCACCAACTGACATAAAGC
CAAGTGTGACTTATAATGGAAAAATTAGTGCAATACCATCGATGACAACAACAACAACAA
TACAGCGTCCAACAACTTTCATTACAGCGCTCTCAAATAATAACAATAGCAACGTACTGA
ATGCCAATAATAATAACAATAACATCAATAAATTGTCGCTCAAAATTAAAGCTGAGCCTG
AAGACTATTATGATGATGAACCACCTAGCAAAAGAAGATGTAATAT
>g3732.t10 Gene=g3732 Length=244
MPPYQSQQAMIPAFLTEDANNSIESLETTSSMSDSSIMDEVVNASNGKGRPRTNYAPAAV
VNNGQPKRRNAGGRKPNKPSNLSPEEEEKRRIRRERNKQAAARCRRRREDHTQDLQGQVD
EMEEKKRQLTQEIQQMSKMRDELCELIEEHKKSNECNMVIRGGSPTDIKPSVTYNGKISA
IPSMTTTTTIQRPTTFITALSNNNNSNVLNANNNNNNINKLSLKIKAEPEDYYDDEPPSK
RRCN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g3732.t10 | Coils | Coil | Coil | 108 | 146 | - |
| 8 | g3732.t10 | Gene3D | G3DSA:1.20.5.170 | - | 88 | 143 | 2.5E-17 |
| 14 | g3732.t10 | MobiDBLite | mobidb-lite | consensus disorder prediction | 22 | 50 | - |
| 15 | g3732.t10 | MobiDBLite | mobidb-lite | consensus disorder prediction | 22 | 124 | - |
| 13 | g3732.t10 | MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 95 | - |
| 12 | g3732.t10 | MobiDBLite | mobidb-lite | consensus disorder prediction | 102 | 124 | - |
| 2 | g3732.t10 | PANTHER | PTHR23351:SF24 | TRANSCRIPTION FACTOR KAYAK, ISOFORMS A/B/F | 20 | 190 | 6.0E-31 |
| 3 | g3732.t10 | PANTHER | PTHR23351 | FOS TRANSCRIPTION FACTOR-RELATED | 20 | 190 | 6.0E-31 |
| 4 | g3732.t10 | PRINTS | PR00042 | Fos transforming protein signature | 80 | 96 | 1.3E-15 |
| 5 | g3732.t10 | PRINTS | PR00042 | Fos transforming protein signature | 97 | 113 | 1.3E-15 |
| 6 | g3732.t10 | PRINTS | PR00042 | Fos transforming protein signature | 115 | 136 | 1.3E-15 |
| 1 | g3732.t10 | Pfam | PF00170 | bZIP transcription factor | 85 | 143 | 2.4E-9 |
| 11 | g3732.t10 | ProSitePatterns | PS00036 | Basic-leucine zipper (bZIP) domain signature. | 93 | 107 | - |
| 16 | g3732.t10 | ProSiteProfiles | PS50217 | Basic-leucine zipper (bZIP) domain profile. | 87 | 150 | 12.082 |
| 10 | g3732.t10 | SMART | SM00338 | brlzneu | 85 | 149 | 9.6E-12 |
| 7 | g3732.t10 | SUPERFAMILY | SSF57959 | Leucine zipper domain | 89 | 146 | 1.0E-13 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006357 | regulation of transcription by RNA polymerase II | BP |
| GO:0003677 | DNA binding | MF |
| GO:0006355 | regulation of transcription, DNA-templated | BP |
| GO:0003700 | DNA-binding transcription factor activity | MF |
KEGG
Orthology
- This transcript has been annotated with K04379 (proto-oncogene protein c-fos)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
