General information for g3732.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Transcription factor kayak.
Parent gene
- The parent gene g3732 is located on chr_3: 27720249..27721768 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3732 | g3732.t2 | isoform | g3732.t2 | 27719125 | 27720697 |
| chr_3 | g3732 | g3732.t2 | exon | g3732.t2.exon1 | 27719125 | 27719178 |
| chr_3 | g3732 | g3732.t2 | cds | g3732.t2.CDS1 | 27719125 | 27719178 |
| chr_3 | g3732 | g3732.t2 | exon | g3732.t2.exon2 | 27719253 | 27719357 |
| chr_3 | g3732 | g3732.t2 | cds | g3732.t2.CDS2 | 27719253 | 27719357 |
| chr_3 | g3732 | g3732.t2 | exon | g3732.t2.exon3 | 27719416 | 27720248 |
| chr_3 | g3732 | g3732.t2 | cds | g3732.t2.CDS3 | 27719416 | 27720248 |
| chr_3 | g3732 | g3732.t2 | exon | g3732.t2.exon4 | 27720331 | 27720697 |
| chr_3 | g3732 | g3732.t2 | cds | g3732.t2.CDS4 | 27720331 | 27720697 |
| chr_3 | g3732 | g3732.t2 | TTS | g3732.t2 | 27721439 | 27721439 |
| chr_3 | g3732 | g3732.t2 | TSS | g3732.t2 | NA | NA |
Sequences
>g3732.t2 Gene=g3732 Length=1359
ATGGATGCTTGTGAAATTGCAAATTTTCTTGCAAGTGAACTTTTTATGAATCAGTTCGTT
ACAAGCGATTCAGGATACAACGGTTTGAGTGTGATTAGTTGCCCACCAACACGAACAACC
TCAACATTAACACCTACAACACTAAGAAATATTGAACAGACATTTCAAGATCTCACCAAC
GATTCATCACAAGCTGCCCCATATCAGGCTGGATTTGTGCCACCATTGCCCGCTCCAATT
TCAAGTCACGATCAATATATGCCTCCGTATCAAAGTCAACAAGCCATGATTCCCGCTTTT
CTTACTGAGGATGCAAATAATAGTATCGAATCACTTGAAACAACGAGTTCTATGTCTGAT
AGCTCAATTATGGATGAAGTTGTAAATGCCAGTAATGGCAAAGGCCGTCCTAGAACAAAC
TATGCACCCGCTGCAGTTGTAAACAATGGTCAACCAAAGCGTCGCAATGCTGGTGGTCGA
AAACCAAATAAACCTTCAAATTTATCGCCAGAAGAAGAAGAAAAGCGTAGAATTCGTCGT
GAACGAAATAAACAAGCAGCGGCGCGGTGTCGAAGAAGACGAGAAGATCATACACAAGAT
TTGCAGGGACAAGTCGATGAAATGGAAGAAAAGAAACGCCAGTTGACTCAAGAAATTCAA
CAAATGAGCAAAATGCGTGACGAACTTTGTGAATTAATTGAAGAGCACAAAAAATCAAAT
GAATGCAATATGGTCATTCGTGGAGGCTCACCAACTGACATAAAGCCAAGTGTGACTTAT
AATGGAAAAATTAGTGCAATACCATCGATGACAACAACAACAACAATACAGCGTCCAACA
ACTTTCATTACAGCGCTCTCAAATAATAACAATAGCAACGTACTGAATGCCAATAATAAT
AACAATAACATCAATAAATTGTCGCTCAAAATTAAAGCTGAGCCTGAAGACTATTATGAT
GATGAACCACCTAGCAAAAGAAGATGTAATATGCTCTCGGGACAAGAGTATGATATAACA
ACACCAACAACTCCTTACGTTCCTCAACTTAATACACCGACATTTATTCCGACCAAGCAA
TCTTTATGTAAGCCAAATAGACCATCATCACTAAATGTTGCCTCAAATTTAAAACCATCA
GAGTCTTTAGCGCGCAAAAATGTCACAGAAATTGCAGGAGTCAATGTATGCACGCCTTCA
ACAGGAATGTTCAATTTCGACAGTCTCATGGAAGGAGGTACTGGTCTGACGCCAATCACA
TCAAATCCTCTTATTCCCTGTTCAACACAAAATCGCAATCCTTTAGAAATGTTTAACACT
CCGACAAGCGGAAGCGAAAGCAAGCTTGTTAGCCTTTGA
>g3732.t2 Gene=g3732 Length=452
MDACEIANFLASELFMNQFVTSDSGYNGLSVISCPPTRTTSTLTPTTLRNIEQTFQDLTN
DSSQAAPYQAGFVPPLPAPISSHDQYMPPYQSQQAMIPAFLTEDANNSIESLETTSSMSD
SSIMDEVVNASNGKGRPRTNYAPAAVVNNGQPKRRNAGGRKPNKPSNLSPEEEEKRRIRR
ERNKQAAARCRRRREDHTQDLQGQVDEMEEKKRQLTQEIQQMSKMRDELCELIEEHKKSN
ECNMVIRGGSPTDIKPSVTYNGKISAIPSMTTTTTIQRPTTFITALSNNNNSNVLNANNN
NNNINKLSLKIKAEPEDYYDDEPPSKRRCNMLSGQEYDITTPTTPYVPQLNTPTFIPTKQ
SLCKPNRPSSLNVASNLKPSESLARKNVTEIAGVNVCTPSTGMFNFDSLMEGGTGLTPIT
SNPLIPCSTQNRNPLEMFNTPTSGSESKLVSL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g3732.t2 | Coils | Coil | Coil | 194 | 232 | - |
| 8 | g3732.t2 | Gene3D | G3DSA:1.20.5.170 | - | 174 | 229 | 6.5E-17 |
| 13 | g3732.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 131 | 210 | - |
| 14 | g3732.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 166 | 181 | - |
| 12 | g3732.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 188 | 210 | - |
| 2 | g3732.t2 | PANTHER | PTHR23351:SF24 | TRANSCRIPTION FACTOR KAYAK, ISOFORMS A/B/F | 33 | 429 | 3.0E-42 |
| 3 | g3732.t2 | PANTHER | PTHR23351 | FOS TRANSCRIPTION FACTOR-RELATED | 33 | 429 | 3.0E-42 |
| 6 | g3732.t2 | PRINTS | PR00042 | Fos transforming protein signature | 166 | 182 | 5.9E-15 |
| 5 | g3732.t2 | PRINTS | PR00042 | Fos transforming protein signature | 183 | 199 | 5.9E-15 |
| 4 | g3732.t2 | PRINTS | PR00042 | Fos transforming protein signature | 201 | 222 | 5.9E-15 |
| 1 | g3732.t2 | Pfam | PF00170 | bZIP transcription factor | 171 | 229 | 6.4E-9 |
| 11 | g3732.t2 | ProSitePatterns | PS00036 | Basic-leucine zipper (bZIP) domain signature. | 179 | 193 | - |
| 15 | g3732.t2 | ProSiteProfiles | PS50217 | Basic-leucine zipper (bZIP) domain profile. | 173 | 236 | 12.082 |
| 10 | g3732.t2 | SMART | SM00338 | brlzneu | 171 | 235 | 9.6E-12 |
| 7 | g3732.t2 | SUPERFAMILY | SSF57959 | Leucine zipper domain | 175 | 232 | 3.02E-13 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006357 | regulation of transcription by RNA polymerase II | BP |
| GO:0003677 | DNA binding | MF |
| GO:0006355 | regulation of transcription, DNA-templated | BP |
| GO:0003700 | DNA-binding transcription factor activity | MF |
KEGG
Orthology
- This transcript has been annotated with K09031 (fos-like antigen, invertebrate)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
