General information for g3732.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g3732 is located on chr_3: 27720249..27721768 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3732 | g3732.t3 | isoform | g3732.t3 | 27715044 | 27719891 |
| chr_3 | g3732 | g3732.t3 | exon | g3732.t3.exon1 | 27715044 | 27715211 |
| chr_3 | g3732 | g3732.t3 | cds | g3732.t3.CDS1 | 27715044 | 27715211 |
| chr_3 | g3732 | g3732.t3 | TSS | g3732.t3 | 27715054 | 27715054 |
| chr_3 | g3732 | g3732.t3 | exon | g3732.t3.exon2 | 27719253 | 27719357 |
| chr_3 | g3732 | g3732.t3 | cds | g3732.t3.CDS2 | 27719253 | 27719357 |
| chr_3 | g3732 | g3732.t3 | exon | g3732.t3.exon3 | 27719416 | 27719891 |
| chr_3 | g3732 | g3732.t3 | cds | g3732.t3.CDS3 | 27719416 | 27719889 |
| chr_3 | g3732 | g3732.t3 | TTS | g3732.t3 | NA | NA |
Sequences
>g3732.t3 Gene=g3732 Length=749
ATGAAGCTACGCATTCCACGACGAATAAAAGTCGAAGACGAATCTTCAGAAGAGTCTGAG
AATGAACCTATTGCTGATGAAACAGAAACAACTACGAGTGGCAGCAAAGTTGTTCTTGCA
CAACAGGAAGATAGTCAAGTACATGCAAATACAAAGTCGATTGCTGTGTTCGTTACAAGC
GATTCAGGATACAACGGTTTGAGTGTGATTAGTTGCCCACCAACACGAACAACCTCAACA
TTAACACCTACAACACTAAGAAATATTGAACAGACATTTCAAGATCTCACCAACGATTCA
TCACAAGCTGCCCCATATCAGGCTGGATTTGTGCCACCATTGCCCGCTCCAATTTCAAGT
CACGATCAATATATGCCTCCGTATCAAAGTCAACAAGCCATGATTCCCGCTTTTCTTACT
GAGGATGCAAATAATAGTATCGAATCACTTGAAACAACGAGTTCTATGTCTGATAGCTCA
ATTATGGATGAAGTTGTAAATGCCAGTAATGGCAAAGGCCGTCCTAGAACAAACTATGCA
CCCGCTGCAGTTGTAAACAATGGTCAACCAAAGCGTCGCAATGCTGGTGGTCGAAAACCA
AATAAACCTTCAAATTTATCGCCAGAAGAAGAAGAAAAGCGTAGAATTCGTCGTGAACGA
AATAAACAAGCAGCGGCGCGGTGTCGAAGAAGACGAGAAGATCATACACAAGATTTGCAG
GGACAAGTCGATGAAATGGAAGAAAAGAA
>g3732.t3 Gene=g3732 Length=249
MKLRIPRRIKVEDESSEESENEPIADETETTTSGSKVVLAQQEDSQVHANTKSIAVFVTS
DSGYNGLSVISCPPTRTTSTLTPTTLRNIEQTFQDLTNDSSQAAPYQAGFVPPLPAPISS
HDQYMPPYQSQQAMIPAFLTEDANNSIESLETTSSMSDSSIMDEVVNASNGKGRPRTNYA
PAAVVNNGQPKRRNAGGRKPNKPSNLSPEEEEKRRIRRERNKQAAARCRRRREDHTQDLQ
GQVDEMEEK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 13 | g3732.t3 | Gene3D | G3DSA:1.20.5.170 | - | 212 | 249 | 5.4E-12 |
| 11 | g3732.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 35 | - |
| 12 | g3732.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 15 | - |
| 8 | g3732.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 169 | 249 | - |
| 9 | g3732.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 204 | 219 | - |
| 10 | g3732.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 226 | 243 | - |
| 1 | g3732.t3 | PANTHER | PTHR23351:SF24 | TRANSCRIPTION FACTOR KAYAK, ISOFORMS A/B/F | 71 | 248 | 1.9E-25 |
| 2 | g3732.t3 | PANTHER | PTHR23351 | FOS TRANSCRIPTION FACTOR-RELATED | 71 | 248 | 1.9E-25 |
| 3 | g3732.t3 | PRINTS | PR00042 | Fos transforming protein signature | 204 | 220 | 8.7E-13 |
| 5 | g3732.t3 | PRINTS | PR00042 | Fos transforming protein signature | 221 | 237 | 8.7E-13 |
| 4 | g3732.t3 | PRINTS | PR00042 | Fos transforming protein signature | 239 | 249 | 8.7E-13 |
| 7 | g3732.t3 | ProSitePatterns | PS00036 | Basic-leucine zipper (bZIP) domain signature. | 217 | 231 | - |
| 14 | g3732.t3 | ProSiteProfiles | PS50217 | Basic-leucine zipper (bZIP) domain profile. | 211 | 249 | 10.162 |
| 6 | g3732.t3 | SUPERFAMILY | SSF57959 | Leucine zipper domain | 213 | 248 | 1.04E-8 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006357 | regulation of transcription by RNA polymerase II | BP |
| GO:0003677 | DNA binding | MF |
| GO:0006355 | regulation of transcription, DNA-templated | BP |
| GO:0003700 | DNA-binding transcription factor activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed