Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3732 g3732.t5 TSS g3732.t5 27715922 27715922
chr_3 g3732 g3732.t5 isoform g3732.t5 27716025 27719891
chr_3 g3732 g3732.t5 exon g3732.t5.exon1 27716025 27716309
chr_3 g3732 g3732.t5 cds g3732.t5.CDS1 27716241 27716309
chr_3 g3732 g3732.t5 exon g3732.t5.exon2 27719253 27719357
chr_3 g3732 g3732.t5 cds g3732.t5.CDS2 27719253 27719357
chr_3 g3732 g3732.t5 exon g3732.t5.exon3 27719416 27719891
chr_3 g3732 g3732.t5 cds g3732.t5.CDS3 27719416 27719889
chr_3 g3732 g3732.t5 TTS g3732.t5 NA NA

Sequences

>g3732.t5 Gene=g3732 Length=866
ATATTTACTTTAGATAAAGAGGAAAAATAAAATTTTACAATAAAATTGTGTATACGAGGA
AAGAAAATATTTATTTAAAAGAGAATAATATTACAAAATAGAAAAAGTTGAACATTATTG
ACAATATTGTGTGTGCATTGCATATATATTGAGAGTGAATAAATAATGACTCTGGACAAT
TCTTTAATTAATGATACGTTTATGTATCCGTATACAATGGATTATAGCAGTTCGCCATTG
ATACCGGTATCATACACAACTTATACTACACATGGTAATAAAATGTTCGTTACAAGCGAT
TCAGGATACAACGGTTTGAGTGTGATTAGTTGCCCACCAACACGAACAACCTCAACATTA
ACACCTACAACACTAAGAAATATTGAACAGACATTTCAAGATCTCACCAACGATTCATCA
CAAGCTGCCCCATATCAGGCTGGATTTGTGCCACCATTGCCCGCTCCAATTTCAAGTCAC
GATCAATATATGCCTCCGTATCAAAGTCAACAAGCCATGATTCCCGCTTTTCTTACTGAG
GATGCAAATAATAGTATCGAATCACTTGAAACAACGAGTTCTATGTCTGATAGCTCAATT
ATGGATGAAGTTGTAAATGCCAGTAATGGCAAAGGCCGTCCTAGAACAAACTATGCACCC
GCTGCAGTTGTAAACAATGGTCAACCAAAGCGTCGCAATGCTGGTGGTCGAAAACCAAAT
AAACCTTCAAATTTATCGCCAGAAGAAGAAGAAAAGCGTAGAATTCGTCGTGAACGAAAT
AAACAAGCAGCGGCGCGGTGTCGAAGAAGACGAGAAGATCATACACAAGATTTGCAGGGA
CAAGTCGATGAAATGGAAGAAAAGAA

>g3732.t5 Gene=g3732 Length=216
MDYSSSPLIPVSYTTYTTHGNKMFVTSDSGYNGLSVISCPPTRTTSTLTPTTLRNIEQTF
QDLTNDSSQAAPYQAGFVPPLPAPISSHDQYMPPYQSQQAMIPAFLTEDANNSIESLETT
SSMSDSSIMDEVVNASNGKGRPRTNYAPAAVVNNGQPKRRNAGGRKPNKPSNLSPEEEEK
RRIRRERNKQAAARCRRRREDHTQDLQGQVDEMEEK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g3732.t5 Gene3D G3DSA:1.20.5.170 - 179 216 4.4E-12
8 g3732.t5 MobiDBLite mobidb-lite consensus disorder prediction 136 216 -
10 g3732.t5 MobiDBLite mobidb-lite consensus disorder prediction 171 186 -
9 g3732.t5 MobiDBLite mobidb-lite consensus disorder prediction 193 210 -
1 g3732.t5 PANTHER PTHR23351:SF24 TRANSCRIPTION FACTOR KAYAK, ISOFORMS A/B/F 38 215 1.9E-27
2 g3732.t5 PANTHER PTHR23351 FOS TRANSCRIPTION FACTOR-RELATED 38 215 1.9E-27
3 g3732.t5 PRINTS PR00042 Fos transforming protein signature 171 187 6.3E-13
5 g3732.t5 PRINTS PR00042 Fos transforming protein signature 188 204 6.3E-13
4 g3732.t5 PRINTS PR00042 Fos transforming protein signature 206 216 6.3E-13
7 g3732.t5 ProSitePatterns PS00036 Basic-leucine zipper (bZIP) domain signature. 184 198 -
12 g3732.t5 ProSiteProfiles PS50217 Basic-leucine zipper (bZIP) domain profile. 178 216 10.162
6 g3732.t5 SUPERFAMILY SSF57959 Leucine zipper domain 180 215 8.84E-9

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006357 regulation of transcription by RNA polymerase II BP
GO:0003677 DNA binding MF
GO:0006355 regulation of transcription, DNA-templated BP
GO:0003700 DNA-binding transcription factor activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values