General information for g3732.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Transcription factor kayak.
Parent gene
- The parent gene g3732 is located on chr_3: 27720249..27721768 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3732 | g3732.t6 | TSS | g3732.t6 | 27715922 | 27715922 |
| chr_3 | g3732 | g3732.t6 | isoform | g3732.t6 | 27716025 | 27721768 |
| chr_3 | g3732 | g3732.t6 | exon | g3732.t6.exon1 | 27716025 | 27716309 |
| chr_3 | g3732 | g3732.t6 | cds | g3732.t6.CDS1 | 27716241 | 27716309 |
| chr_3 | g3732 | g3732.t6 | exon | g3732.t6.exon2 | 27719253 | 27719357 |
| chr_3 | g3732 | g3732.t6 | cds | g3732.t6.CDS2 | 27719253 | 27719357 |
| chr_3 | g3732 | g3732.t6 | exon | g3732.t6.exon3 | 27719416 | 27720248 |
| chr_3 | g3732 | g3732.t6 | cds | g3732.t6.CDS3 | 27719416 | 27720248 |
| chr_3 | g3732 | g3732.t6 | exon | g3732.t6.exon4 | 27720331 | 27721768 |
| chr_3 | g3732 | g3732.t6 | cds | g3732.t6.CDS4 | 27720331 | 27720697 |
| chr_3 | g3732 | g3732.t6 | TTS | g3732.t6 | 27721764 | 27721764 |
Sequences
>g3732.t6 Gene=g3732 Length=2661
ATATTTACTTTAGATAAAGAGGAAAAATAAAATTTTACAATAAAATTGTGTATACGAGGA
AAGAAAATATTTATTTAAAAGAGAATAATATTACAAAATAGAAAAAGTTGAACATTATTG
ACAATATTGTGTGTGCATTGCATATATATTGAGAGTGAATAAATAATGACTCTGGACAAT
TCTTTAATTAATGATACGTTTATGTATCCGTATACAATGGATTATAGCAGTTCGCCATTG
ATACCGGTATCATACACAACTTATACTACACATGGTAATAAAATGTTCGTTACAAGCGAT
TCAGGATACAACGGTTTGAGTGTGATTAGTTGCCCACCAACACGAACAACCTCAACATTA
ACACCTACAACACTAAGAAATATTGAACAGACATTTCAAGATCTCACCAACGATTCATCA
CAAGCTGCCCCATATCAGGCTGGATTTGTGCCACCATTGCCCGCTCCAATTTCAAGTCAC
GATCAATATATGCCTCCGTATCAAAGTCAACAAGCCATGATTCCCGCTTTTCTTACTGAG
GATGCAAATAATAGTATCGAATCACTTGAAACAACGAGTTCTATGTCTGATAGCTCAATT
ATGGATGAAGTTGTAAATGCCAGTAATGGCAAAGGCCGTCCTAGAACAAACTATGCACCC
GCTGCAGTTGTAAACAATGGTCAACCAAAGCGTCGCAATGCTGGTGGTCGAAAACCAAAT
AAACCTTCAAATTTATCGCCAGAAGAAGAAGAAAAGCGTAGAATTCGTCGTGAACGAAAT
AAACAAGCAGCGGCGCGGTGTCGAAGAAGACGAGAAGATCATACACAAGATTTGCAGGGA
CAAGTCGATGAAATGGAAGAAAAGAAACGCCAGTTGACTCAAGAAATTCAACAAATGAGC
AAAATGCGTGACGAACTTTGTGAATTAATTGAAGAGCACAAAAAATCAAATGAATGCAAT
ATGGTCATTCGTGGAGGCTCACCAACTGACATAAAGCCAAGTGTGACTTATAATGGAAAA
ATTAGTGCAATACCATCGATGACAACAACAACAACAATACAGCGTCCAACAACTTTCATT
ACAGCGCTCTCAAATAATAACAATAGCAACGTACTGAATGCCAATAATAATAACAATAAC
ATCAATAAATTGTCGCTCAAAATTAAAGCTGAGCCTGAAGACTATTATGATGATGAACCA
CCTAGCAAAAGAAGATGTAATATGCTCTCGGGACAAGAGTATGATATAACAACACCAACA
ACTCCTTACGTTCCTCAACTTAATACACCGACATTTATTCCGACCAAGCAATCTTTATGT
AAGCCAAATAGACCATCATCACTAAATGTTGCCTCAAATTTAAAACCATCAGAGTCTTTA
GCGCGCAAAAATGTCACAGAAATTGCAGGAGTCAATGTATGCACGCCTTCAACAGGAATG
TTCAATTTCGACAGTCTCATGGAAGGAGGTACTGGTCTGACGCCAATCACATCAAATCCT
CTTATTCCCTGTTCAACACAAAATCGCAATCCTTTAGAAATGTTTAACACTCCGACAAGC
GGAAGCGAAAGCAAGCTTGTTAGCCTTTGAAAGACGAAAGAAAGAGACAAGCGAGATGAA
GAGGAGCAATTGGTTTGTTACTTTTATTATTCAAGTTTATAATTTAATGATGAAAAAAAA
CCAACACACACATAAAGTAACTACATATTTAAGTTTAAGTTTATTTTTTGCTGCGCAAAT
TTTTCTCCTTTTTCAACTCTTATTTTTTTTTTTGCCTAAATGTCGCTTCATCCATTCGCA
TTAAAAATGTGTGTGTTTGTACATGTGAGAAACCACAAAGTGCACTTGTTTTTGAAGAGG
AACTCAGGCATATTAGCATGGGTCAGTGAACATTCTTTAAAATTTGGTAAATTGTGAAAA
TATTTTCAAAGACATAACATTAGAACAATCGTAATTATTTCTACTCTCTTTTTTCTTATC
ACAATTTAAATAATTTTGAAAATTGTTTATTGATTTTTATGCTGATTTGTTGCTTAATAT
TTTCACATGTTCATCATTCACATAAAAAATATGAAGATGAAGTCTAGTGTGTGATCAAAT
TAGAAAAGAAATTTCATTTAGTGTCATGTAAATACCACCATGTTGAGACTTAAGTTTTTA
TTTCTTATTTATTTAGTCAATAACTTTAAACTATACTGAAGCAATCAACTGAGACATTTG
TGAAATTTCTTCTCTTTATTTTGATACATATATATATTTTTTGTTCGTTTTTAGCTGATA
AATGCTTTTTTATTCTGTGCATACAACCAACAAATAAGAAAGAATATTTGATAAAAAAAG
AAAAATATTTTACCTATAAGAGATAAGAAATGGCGTTGTGATTTTTGATGATCGCAAGTG
AAAGAAAGATTAATTTTTAAATGTATTCTAATTTACTATGTATTTGAATGAGATATGTGA
GCATAAGTGAATAAAGTAAATGAAAATTGTCGCCATTTTTTACCAAATAAATGAAATGAA
AGCAAAAATAAACACAAATATCTAACTAAAATGATAATGATAAAAAATTAACATTTTTTT
GAAAGTGAGAAAAATAAAGAAATATTTTTATATTATAAAGCAAAATGAAATAAAAGAGAA
TATTGCATGAAATGCTTAAAA
>g3732.t6 Gene=g3732 Length=457
MDYSSSPLIPVSYTTYTTHGNKMFVTSDSGYNGLSVISCPPTRTTSTLTPTTLRNIEQTF
QDLTNDSSQAAPYQAGFVPPLPAPISSHDQYMPPYQSQQAMIPAFLTEDANNSIESLETT
SSMSDSSIMDEVVNASNGKGRPRTNYAPAAVVNNGQPKRRNAGGRKPNKPSNLSPEEEEK
RRIRRERNKQAAARCRRRREDHTQDLQGQVDEMEEKKRQLTQEIQQMSKMRDELCELIEE
HKKSNECNMVIRGGSPTDIKPSVTYNGKISAIPSMTTTTTIQRPTTFITALSNNNNSNVL
NANNNNNNINKLSLKIKAEPEDYYDDEPPSKRRCNMLSGQEYDITTPTTPYVPQLNTPTF
IPTKQSLCKPNRPSSLNVASNLKPSESLARKNVTEIAGVNVCTPSTGMFNFDSLMEGGTG
LTPITSNPLIPCSTQNRNPLEMFNTPTSGSESKLVSL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g3732.t6 | Coils | Coil | Coil | 199 | 237 | - |
| 8 | g3732.t6 | Gene3D | G3DSA:1.20.5.170 | - | 179 | 234 | 6.6E-17 |
| 13 | g3732.t6 | MobiDBLite | mobidb-lite | consensus disorder prediction | 136 | 215 | - |
| 14 | g3732.t6 | MobiDBLite | mobidb-lite | consensus disorder prediction | 171 | 186 | - |
| 12 | g3732.t6 | MobiDBLite | mobidb-lite | consensus disorder prediction | 193 | 215 | - |
| 2 | g3732.t6 | PANTHER | PTHR23351:SF24 | TRANSCRIPTION FACTOR KAYAK, ISOFORMS A/B/F | 38 | 434 | 4.0E-42 |
| 3 | g3732.t6 | PANTHER | PTHR23351 | FOS TRANSCRIPTION FACTOR-RELATED | 38 | 434 | 4.0E-42 |
| 4 | g3732.t6 | PRINTS | PR00042 | Fos transforming protein signature | 171 | 187 | 6.1E-15 |
| 5 | g3732.t6 | PRINTS | PR00042 | Fos transforming protein signature | 188 | 204 | 6.1E-15 |
| 6 | g3732.t6 | PRINTS | PR00042 | Fos transforming protein signature | 206 | 227 | 6.1E-15 |
| 1 | g3732.t6 | Pfam | PF00170 | bZIP transcription factor | 176 | 234 | 6.5E-9 |
| 11 | g3732.t6 | ProSitePatterns | PS00036 | Basic-leucine zipper (bZIP) domain signature. | 184 | 198 | - |
| 15 | g3732.t6 | ProSiteProfiles | PS50217 | Basic-leucine zipper (bZIP) domain profile. | 178 | 241 | 12.082 |
| 10 | g3732.t6 | SMART | SM00338 | brlzneu | 176 | 240 | 9.6E-12 |
| 7 | g3732.t6 | SUPERFAMILY | SSF57959 | Leucine zipper domain | 180 | 237 | 3.09E-13 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006357 | regulation of transcription by RNA polymerase II | BP |
| GO:0003677 | DNA binding | MF |
| GO:0006355 | regulation of transcription, DNA-templated | BP |
| GO:0003700 | DNA-binding transcription factor activity | MF |
KEGG
Orthology
- This transcript has been annotated with K04379 (proto-oncogene protein c-fos)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
