Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Transcription factor kayak.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3732 g3732.t8 isoform g3732.t8 27717841 27720697
chr_3 g3732 g3732.t8 exon g3732.t8.exon1 27717841 27718274
chr_3 g3732 g3732.t8 exon g3732.t8.exon2 27719096 27719178
chr_3 g3732 g3732.t8 cds g3732.t8.CDS1 27719125 27719178
chr_3 g3732 g3732.t8 exon g3732.t8.exon3 27719253 27719357
chr_3 g3732 g3732.t8 cds g3732.t8.CDS2 27719253 27719357
chr_3 g3732 g3732.t8 exon g3732.t8.exon4 27719416 27720248
chr_3 g3732 g3732.t8 cds g3732.t8.CDS3 27719416 27720248
chr_3 g3732 g3732.t8 exon g3732.t8.exon5 27720331 27720697
chr_3 g3732 g3732.t8 cds g3732.t8.CDS4 27720331 27720697
chr_3 g3732 g3732.t8 TTS g3732.t8 27721439 27721439
chr_3 g3732 g3732.t8 TSS g3732.t8 NA NA

Sequences

>g3732.t8 Gene=g3732 Length=1822
TACGCAAAAAGTGTATTTTTACACAAAATGTTCTTTTTAAAATAATTATTTTTTCTTTCT
TCTACTCGTCTCTAAAATTAAAAGTCAGAGAAAAAAAAAAGAGAATAAAACTGAAGCATT
TAATTTTTTTGTCGCTCACATACAAGAGCTGAAAGGCGATTTTTTACTTCGTCACTTTTT
TACGTGTGAATATTTGTTGAAAACAAATAAGAAAAACCTTTTTCTCTCTCTATTCTAAAA
TACTCTCAGTCGACCCCGAAAAGCCGAATGAATTAAAACGCTAGTTTTAAGCAAAATTTT
AATATTTTAATTTAATTTTCTCCCGAAATTTTTTGATTTTTTTGAAACGCAAATTTTTTT
CTCGACAACAGTGCGAAACGAATAAAAGAAAACTTTTGAAAATAATTAATTATTGTCAAA
TCGAACGAAATACTATTGAAATCACTCTAACTTAATTTATACAATGGATGCTTGTGAAAT
TGCAAATTTTCTTGCAAGTGAACTTTTTATGAATCAGTTCGTTACAAGCGATTCAGGATA
CAACGGTTTGAGTGTGATTAGTTGCCCACCAACACGAACAACCTCAACATTAACACCTAC
AACACTAAGAAATATTGAACAGACATTTCAAGATCTCACCAACGATTCATCACAAGCTGC
CCCATATCAGGCTGGATTTGTGCCACCATTGCCCGCTCCAATTTCAAGTCACGATCAATA
TATGCCTCCGTATCAAAGTCAACAAGCCATGATTCCCGCTTTTCTTACTGAGGATGCAAA
TAATAGTATCGAATCACTTGAAACAACGAGTTCTATGTCTGATAGCTCAATTATGGATGA
AGTTGTAAATGCCAGTAATGGCAAAGGCCGTCCTAGAACAAACTATGCACCCGCTGCAGT
TGTAAACAATGGTCAACCAAAGCGTCGCAATGCTGGTGGTCGAAAACCAAATAAACCTTC
AAATTTATCGCCAGAAGAAGAAGAAAAGCGTAGAATTCGTCGTGAACGAAATAAACAAGC
AGCGGCGCGGTGTCGAAGAAGACGAGAAGATCATACACAAGATTTGCAGGGACAAGTCGA
TGAAATGGAAGAAAAGAAACGCCAGTTGACTCAAGAAATTCAACAAATGAGCAAAATGCG
TGACGAACTTTGTGAATTAATTGAAGAGCACAAAAAATCAAATGAATGCAATATGGTCAT
TCGTGGAGGCTCACCAACTGACATAAAGCCAAGTGTGACTTATAATGGAAAAATTAGTGC
AATACCATCGATGACAACAACAACAACAATACAGCGTCCAACAACTTTCATTACAGCGCT
CTCAAATAATAACAATAGCAACGTACTGAATGCCAATAATAATAACAATAACATCAATAA
ATTGTCGCTCAAAATTAAAGCTGAGCCTGAAGACTATTATGATGATGAACCACCTAGCAA
AAGAAGATGTAATATGCTCTCGGGACAAGAGTATGATATAACAACACCAACAACTCCTTA
CGTTCCTCAACTTAATACACCGACATTTATTCCGACCAAGCAATCTTTATGTAAGCCAAA
TAGACCATCATCACTAAATGTTGCCTCAAATTTAAAACCATCAGAGTCTTTAGCGCGCAA
AAATGTCACAGAAATTGCAGGAGTCAATGTATGCACGCCTTCAACAGGAATGTTCAATTT
CGACAGTCTCATGGAAGGAGGTACTGGTCTGACGCCAATCACATCAAATCCTCTTATTCC
CTGTTCAACACAAAATCGCAATCCTTTAGAAATGTTTAACACTCCGACAAGCGGAAGCGA
AAGCAAGCTTGTTAGCCTTTGA

>g3732.t8 Gene=g3732 Length=452
MDACEIANFLASELFMNQFVTSDSGYNGLSVISCPPTRTTSTLTPTTLRNIEQTFQDLTN
DSSQAAPYQAGFVPPLPAPISSHDQYMPPYQSQQAMIPAFLTEDANNSIESLETTSSMSD
SSIMDEVVNASNGKGRPRTNYAPAAVVNNGQPKRRNAGGRKPNKPSNLSPEEEEKRRIRR
ERNKQAAARCRRRREDHTQDLQGQVDEMEEKKRQLTQEIQQMSKMRDELCELIEEHKKSN
ECNMVIRGGSPTDIKPSVTYNGKISAIPSMTTTTTIQRPTTFITALSNNNNSNVLNANNN
NNNINKLSLKIKAEPEDYYDDEPPSKRRCNMLSGQEYDITTPTTPYVPQLNTPTFIPTKQ
SLCKPNRPSSLNVASNLKPSESLARKNVTEIAGVNVCTPSTGMFNFDSLMEGGTGLTPIT
SNPLIPCSTQNRNPLEMFNTPTSGSESKLVSL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g3732.t8 Coils Coil Coil 194 232 -
8 g3732.t8 Gene3D G3DSA:1.20.5.170 - 174 229 6.5E-17
13 g3732.t8 MobiDBLite mobidb-lite consensus disorder prediction 131 210 -
14 g3732.t8 MobiDBLite mobidb-lite consensus disorder prediction 166 181 -
12 g3732.t8 MobiDBLite mobidb-lite consensus disorder prediction 188 210 -
2 g3732.t8 PANTHER PTHR23351:SF24 TRANSCRIPTION FACTOR KAYAK, ISOFORMS A/B/F 33 429 3.0E-42
3 g3732.t8 PANTHER PTHR23351 FOS TRANSCRIPTION FACTOR-RELATED 33 429 3.0E-42
6 g3732.t8 PRINTS PR00042 Fos transforming protein signature 166 182 5.9E-15
5 g3732.t8 PRINTS PR00042 Fos transforming protein signature 183 199 5.9E-15
4 g3732.t8 PRINTS PR00042 Fos transforming protein signature 201 222 5.9E-15
1 g3732.t8 Pfam PF00170 bZIP transcription factor 171 229 6.4E-9
11 g3732.t8 ProSitePatterns PS00036 Basic-leucine zipper (bZIP) domain signature. 179 193 -
15 g3732.t8 ProSiteProfiles PS50217 Basic-leucine zipper (bZIP) domain profile. 173 236 12.082
10 g3732.t8 SMART SM00338 brlzneu 171 235 9.6E-12
7 g3732.t8 SUPERFAMILY SSF57959 Leucine zipper domain 175 232 3.02E-13

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006357 regulation of transcription by RNA polymerase II BP
GO:0003677 DNA binding MF
GO:0006355 regulation of transcription, DNA-templated BP
GO:0003700 DNA-binding transcription factor activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values